Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14730

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,116,635	+		HMPREF1058_RS14735	0.61	+0.3
1,116,635	+		HMPREF1058_RS14735	0.61	-0.1
1,116,636	-		HMPREF1058_RS14735	0.62	-1.7
1,116,757	-		HMPREF1058_RS14735	0.74	-0.3
1,116,772	+		HMPREF1058_RS14735	0.75	+1.4
1,116,787	+		HMPREF1058_RS14735	0.76	-1.5
1,116,788	-		HMPREF1058_RS14735	0.77	-1.4
1,116,788	-		HMPREF1058_RS14735	0.77	-1.7
1,116,885	+		HMPREF1058_RS14735	0.86	-0.1
1,116,886	-		HMPREF1058_RS14735	0.86	-1.1
1,116,886	-		HMPREF1058_RS14735	0.86	+0.2
1,116,886	-		HMPREF1058_RS14735	0.86	-0.6
1,116,886	-		HMPREF1058_RS14735	0.86	-0.4
1,117,219	-				-1.5
1,117,386	+				-0.3
1,117,390	+				-1.2
1,117,390	+				-1.4
1,117,391	-				+0.3
1,117,463	+				+1.4
1,117,509	-				-1.1
1,117,524	-				+1.4
1,117,600	-				-0.3
1,117,983	+		HMPREF1058_RS14730	0.28	-3.8
1,117,983	+		HMPREF1058_RS14730	0.28	-1.5
1,118,016	+		HMPREF1058_RS14730	0.31	-1.5
1,118,019	+		HMPREF1058_RS14730	0.31	-3.0
1,118,020	-		HMPREF1058_RS14730	0.31	-0.8
1,118,066	+		HMPREF1058_RS14730	0.35	-2.8
1,118,074	-		HMPREF1058_RS14730	0.35	-2.0
1,118,074	-		HMPREF1058_RS14730	0.35	-2.7
1,118,232	-		HMPREF1058_RS14730	0.47	-2.9
1,118,448	-		HMPREF1058_RS14730	0.64	-2.9
1,118,522	-		HMPREF1058_RS14730	0.70	-4.0
1,118,590	+		HMPREF1058_RS14730	0.75	-3.7
1,118,598	+		HMPREF1058_RS14730	0.75	+0.5
1,118,611	-		HMPREF1058_RS14730	0.76	-4.0
1,118,640	+		HMPREF1058_RS14730	0.79	-0.4
1,118,641	-		HMPREF1058_RS14730	0.79	-3.2
1,118,641	-		HMPREF1058_RS14730	0.79	-1.5
1,118,683	-		HMPREF1058_RS14730	0.82	-3.4
1,118,687	+		HMPREF1058_RS14730	0.82	-0.9
1,118,828	+				-1.3
1,118,828	+				+1.2
1,118,828	+				-3.7
1,118,828	+				-3.7
1,118,829	-				-1.3
1,118,920	-				+0.9
1,118,993	-				-2.0
1,119,109	+				-1.4
1,119,122	+				-3.5
1,119,122	+				-2.3
1,119,123	-				-2.3
1,119,175	-		HMPREF1058_RS14725	0.14	-0.6
1,119,244	+		HMPREF1058_RS14725	0.20	-3.5
1,119,244	+		HMPREF1058_RS14725	0.20	-1.8
1,119,245	-		HMPREF1058_RS14725	0.20	-0.9
1,119,336	-		HMPREF1058_RS14725	0.27	-4.1
1,119,390	-		HMPREF1058_RS14725	0.32	-3.5
1,119,401	+		HMPREF1058_RS14725	0.33	+0.0
1,119,402	-		HMPREF1058_RS14725	0.33	+0.2
1,119,402	-		HMPREF1058_RS14725	0.33	-1.7
1,119,437	-		HMPREF1058_RS14725	0.35	-3.3
1,119,446	+		HMPREF1058_RS14725	0.36	-2.3
1,119,564	+		HMPREF1058_RS14725	0.46	-0.2
1,119,565	-		HMPREF1058_RS14725	0.46	-1.6
1,119,567	+		HMPREF1058_RS14725	0.46	-2.5
1,119,595	-		HMPREF1058_RS14725	0.49	-2.2
1,119,595	-		HMPREF1058_RS14725	0.49	-4.1
1,119,651	+		HMPREF1058_RS14725	0.53	-0.5
1,119,797	-		HMPREF1058_RS14725	0.65	-1.9
1,119,880	-		HMPREF1058_RS14725	0.72	-2.8