Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14720

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,119,244	+		HMPREF1058_RS14725	0.20	-3.5
1,119,244	+		HMPREF1058_RS14725	0.20	-1.8
1,119,245	-		HMPREF1058_RS14725	0.20	-0.9
1,119,336	-		HMPREF1058_RS14725	0.27	-4.1
1,119,390	-		HMPREF1058_RS14725	0.32	-3.5
1,119,401	+		HMPREF1058_RS14725	0.33	+0.0
1,119,402	-		HMPREF1058_RS14725	0.33	+0.2
1,119,402	-		HMPREF1058_RS14725	0.33	-1.7
1,119,437	-		HMPREF1058_RS14725	0.35	-3.3
1,119,446	+		HMPREF1058_RS14725	0.36	-2.3
1,119,564	+		HMPREF1058_RS14725	0.46	-0.2
1,119,565	-		HMPREF1058_RS14725	0.46	-1.6
1,119,567	+		HMPREF1058_RS14725	0.46	-2.5
1,119,595	-		HMPREF1058_RS14725	0.49	-2.2
1,119,595	-		HMPREF1058_RS14725	0.49	-4.1
1,119,651	+		HMPREF1058_RS14725	0.53	-0.5
1,119,797	-		HMPREF1058_RS14725	0.65	-1.9
1,119,880	-		HMPREF1058_RS14725	0.72	-2.8
1,119,931	-		HMPREF1058_RS14725	0.76	+2.0
1,119,931	-		HMPREF1058_RS14725	0.76	-3.0
1,120,015	+		HMPREF1058_RS14725	0.83	-0.5
1,120,039	-		HMPREF1058_RS14725	0.85	-3.6
1,120,122	+				-1.6
1,120,124	+				-1.6
1,120,125	-				-3.9
1,120,125	-				-1.8
1,120,125	-				+1.4
1,120,203	+				-2.8
1,120,209	+				-2.3
1,120,210	-				-1.5
1,120,229	-				-3.4
1,120,256	+				+0.3
1,120,318	+				-0.6
1,120,318	+				-2.2
1,120,319	-				-2.0
1,120,334	-				-2.1
1,120,342	+				-0.9
1,120,591	+		HMPREF1058_RS14720	0.15	-1.6
1,120,592	-		HMPREF1058_RS14720	0.15	-2.3
1,120,744	-		HMPREF1058_RS14720	0.21	-3.2
1,120,772	+		HMPREF1058_RS14720	0.23	-0.3
1,120,841	+		HMPREF1058_RS14720	0.25	-3.2
1,120,842	-		HMPREF1058_RS14720	0.25	-3.4
1,120,883	+		HMPREF1058_RS14720	0.27	-2.9
1,120,883	+		HMPREF1058_RS14720	0.27	-0.6
1,120,943	+		HMPREF1058_RS14720	0.30	-2.0
1,120,958	-		HMPREF1058_RS14720	0.30	-0.5
1,120,976	-		HMPREF1058_RS14720	0.31	-0.8
1,120,976	-		HMPREF1058_RS14720	0.31	-2.4
1,120,978	-				+1.8
1,121,032	+		HMPREF1058_RS14720	0.33	-1.5
1,121,032	+		HMPREF1058_RS14720	0.33	-3.4
1,121,038	+		HMPREF1058_RS14720	0.33	+1.2
1,121,038	+		HMPREF1058_RS14720	0.33	+0.2
1,121,104	+		HMPREF1058_RS14720	0.36	-1.8
1,121,105	-		HMPREF1058_RS14720	0.36	-3.8
1,121,106	+		HMPREF1058_RS14720	0.36	-1.0
1,121,106	+		HMPREF1058_RS14720	0.36	+0.5
1,121,107	-		HMPREF1058_RS14720	0.36	-2.2
1,121,162	-		HMPREF1058_RS14720	0.39	-0.6
1,121,254	+		HMPREF1058_RS14720	0.42	-3.1
1,121,359	+		HMPREF1058_RS14720	0.47	-3.2
1,121,399	-		HMPREF1058_RS14720	0.48	-3.0
1,121,632	+				+2.4
1,121,665	+		HMPREF1058_RS14720	0.59	-0.7
1,121,749	+		HMPREF1058_RS14720	0.63	-2.1
1,121,764	+		HMPREF1058_RS14720	0.63	-4.0
1,121,794	+		HMPREF1058_RS14720	0.65	-2.1
1,121,795	-		HMPREF1058_RS14720	0.65	-1.8
1,121,821	+		HMPREF1058_RS14720	0.66	-3.7
1,121,821	+		HMPREF1058_RS14720	0.66	-1.7
1,121,828	-		HMPREF1058_RS14720	0.66	-4.4
1,121,842	+		HMPREF1058_RS14720	0.67	-1.8
1,121,843	-		HMPREF1058_RS14720	0.67	-3.9
1,121,849	-		HMPREF1058_RS14720	0.67	-0.7
1,121,855	+		HMPREF1058_RS14720	0.67	-0.2
1,121,862	+				+0.1
1,121,900	-		HMPREF1058_RS14720	0.69	-1.5
1,121,922	+		HMPREF1058_RS14720	0.70	-2.0
1,121,935	+		HMPREF1058_RS14720	0.70	+1.4
1,122,032	+		HMPREF1058_RS14720	0.74	-2.5
1,122,032	+		HMPREF1058_RS14720	0.74	-0.7
1,122,033	-		HMPREF1058_RS14720	0.74	-3.6
1,122,215	-		HMPREF1058_RS14720	0.82	-2.5
1,122,239	+		HMPREF1058_RS14720	0.83	+0.7
1,122,268	+		HMPREF1058_RS14720	0.84	-1.0
1,122,271	+		HMPREF1058_RS14720	0.84	-1.3
1,122,291	+		HMPREF1058_RS14720	0.85	+1.4
1,122,296	+		HMPREF1058_RS14720	0.85	-3.3
1,122,296	+		HMPREF1058_RS14720	0.85	+0.4
1,122,396	-		HMPREF1058_RS14720	0.89	+0.3
1,122,396	-		HMPREF1058_RS14720	0.89	-1.6
1,122,426	-				+0.7
1,122,432	+				-1.9
1,122,432	+				-3.4
1,122,432	+				-2.3
1,122,433	-				-2.3
1,122,433	-				-1.0
1,122,433	-				-1.9
1,122,514	+				+0.0
1,122,515	-				+2.0
1,122,522	-				-2.7
1,122,564	-				-0.4
1,122,602	+				-1.9
1,122,661	+				+1.8
1,122,661	+				-2.9
1,122,662	-				+1.4
1,122,769	-				+0.1
1,122,845	+				-2.1
1,122,845	+				-1.1
1,122,847	+				-3.7
1,122,847	+				-3.1
1,122,848	-				+1.6
1,122,848	-				+0.6
1,122,893	+				-2.3
1,122,937	+				+0.0
1,122,937	+				-0.1
1,122,938	-				-0.7
1,122,938	-				-0.5
1,122,938	-				+0.4
1,122,938	-				-1.0
1,122,940	+				+0.1
1,122,940	+				-1.6
1,122,941	-				+0.0
1,122,954	-				-0.9
1,123,018	-				+0.4
1,123,169	+				-0.4
1,123,202	+				-1.0
1,123,202	+				-0.3
1,123,202	+				+1.5
1,123,203	-				+0.2
1,123,204	+				+0.3
1,123,205	-				+0.4
1,123,208	+				-3.1
1,123,209	-				+1.4
1,123,209	-				+0.8
1,123,209	-				+0.9
1,123,280	-				-1.2
1,123,283	+				-1.9
1,123,283	+				+2.0
1,123,464	-		HMPREF1058_RS14715	0.21	-1.2
1,123,464	-		HMPREF1058_RS14715	0.21	+1.2
1,123,543	+		HMPREF1058_RS14715	0.26	-1.3
1,123,543	+		HMPREF1058_RS14715	0.26	+0.2
1,123,543	+		HMPREF1058_RS14715	0.26	+0.6
1,123,543	+		HMPREF1058_RS14715	0.26	+1.6
1,123,543	+		HMPREF1058_RS14715	0.26	-0.7
1,123,544	-		HMPREF1058_RS14715	0.26	-0.4
1,123,544	-		HMPREF1058_RS14715	0.26	+1.4
1,123,545	+		HMPREF1058_RS14715	0.26	+1.0
1,123,545	+		HMPREF1058_RS14715	0.26	+0.0