Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14660

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,137,139	-				-0.7
1,137,157	+				-0.6
1,137,187	-				-0.3
1,137,195	+				+0.3
1,137,209	-				-1.3
1,137,218	-				-0.1
1,137,220	+				-0.4
1,137,220	+				+2.2
1,137,444	-		HMPREF1058_RS14665	0.31	-1.7
1,137,452	+		HMPREF1058_RS14665	0.33	-1.1
1,137,453	-		HMPREF1058_RS14665	0.33	+0.4
1,137,545	-		HMPREF1058_RS14665	0.46	-1.0
1,137,576	-				+2.0
1,137,576	-		HMPREF1058_RS14665	0.50	-1.1
1,137,592	+		HMPREF1058_RS14665	0.53	-0.1
1,137,665	+		HMPREF1058_RS14665	0.63	+0.4
1,137,665	+		HMPREF1058_RS14665	0.63	+1.2
1,137,666	-		HMPREF1058_RS14665	0.63	+1.8
1,137,684	-		HMPREF1058_RS14665	0.66	-1.0
1,137,715	-		HMPREF1058_RS14665	0.70	+0.7
1,137,715	-		HMPREF1058_RS14665	0.70	-0.1
1,137,796	-		HMPREF1058_RS14665	0.82	-2.1
1,137,796	-		HMPREF1058_RS14665	0.82	+1.3
1,137,820	+		HMPREF1058_RS14665	0.85	-0.0
1,137,824	+		HMPREF1058_RS14665	0.86	-0.1
1,137,894	+				+0.3
1,137,903	+				+0.2
1,137,920	+				+2.1
1,137,945	+				-0.4
1,137,949	+				-2.4
1,137,950	-				+1.0
1,138,007	+				-0.4
1,138,024	-				-0.7
1,138,064	+				+1.0
1,138,078	-				-0.1
1,138,122	+				+1.0
1,138,123	-				-0.7
1,138,123	-				-0.5
1,138,140	+				-0.7
1,138,224	+				+0.3
1,138,225	-		HMPREF1058_RS14660	0.14	-0.1
1,138,242	+		HMPREF1058_RS14660	0.15	-1.4
1,138,243	-		HMPREF1058_RS14660	0.16	-1.5
1,138,368	-		HMPREF1058_RS14660	0.26	-1.5
1,138,376	-				+0.6
1,138,609	-		HMPREF1058_RS14660	0.47	+1.3
1,138,717	+		HMPREF1058_RS14660	0.56	-0.9
1,138,750	+		HMPREF1058_RS14660	0.59	-0.3
1,138,853	-		HMPREF1058_RS14660	0.68	-1.5
1,138,940	-		HMPREF1058_RS14660	0.75	-0.9
1,138,960	+		HMPREF1058_RS14660	0.77	-0.7
1,138,961	-		HMPREF1058_RS14660	0.77	-0.3
1,138,961	-		HMPREF1058_RS14660	0.77	-0.6
1,138,969	+		HMPREF1058_RS14660	0.78	-1.7
1,139,057	-		HMPREF1058_RS14660	0.85	+0.4
1,139,210	+				-1.1
1,139,210	+				-1.7
1,139,210	+				+1.8
1,139,210	+				+1.2
1,139,210	+				-0.3
1,139,211	-				-2.2
1,139,211	-				+0.7
1,139,211	-				-1.5
1,139,213	-				-2.5
1,139,213	-				-3.1
1,139,213	-				+1.3
1,139,217	-				+0.1
1,139,234	-				-0.1
1,139,426	+				-1.5
1,139,496	-				-0.5
1,139,496	-				-0.6
1,139,519	+				-1.5
1,139,553	-		HMPREF1058_RS14655	0.10	-0.2
1,139,608	-		HMPREF1058_RS14655	0.12	+0.1
1,139,669	+		HMPREF1058_RS14655	0.14	+0.5
1,139,670	-		HMPREF1058_RS14655	0.14	-1.0
1,139,681	-		HMPREF1058_RS14655	0.14	-0.3
1,139,823	+		HMPREF1058_RS14655	0.19	-0.3
1,139,826	-		HMPREF1058_RS14655	0.19	-2.2
1,139,882	+		HMPREF1058_RS14655	0.21	-1.1
1,139,945	-		HMPREF1058_RS14655	0.23	+4.2
1,139,945	-		HMPREF1058_RS14655	0.23	-0.3
1,140,064	+		HMPREF1058_RS14655	0.27	-0.1
1,140,065	-		HMPREF1058_RS14655	0.27	-0.4