Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14610

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,157,753	-				-0.6
1,157,769	+				+0.7
1,157,769	+				+1.2
1,157,775	+				+0.7
1,157,785	+				-1.1
1,157,786	-		HMPREF1058_RS20515	0.10	+2.9
1,157,816	+		HMPREF1058_RS20515	0.14	+3.6
1,157,838	+		HMPREF1058_RS20515	0.17	-0.8
1,157,838	+		HMPREF1058_RS20515	0.17	-0.6
1,157,839	-		HMPREF1058_RS20515	0.17	-0.2
1,157,903	-		HMPREF1058_RS20515	0.26	-0.3
1,157,903	-		HMPREF1058_RS20515	0.26	-0.5
1,157,911	-		HMPREF1058_RS20515	0.27	+1.5
1,158,000	-		HMPREF1058_RS20515	0.38	-0.6
1,158,163	+		HMPREF1058_RS20515	0.60	-1.0
1,158,164	-		HMPREF1058_RS20515	0.60	+1.2
1,158,248	+		HMPREF1058_RS20515	0.71	+2.2
1,158,340	+		HMPREF1058_RS20515	0.83	-0.5
1,158,340	+		HMPREF1058_RS20515	0.83	+2.2
1,158,340	+		HMPREF1058_RS20515	0.83	+0.5
1,158,359	+		HMPREF1058_RS20515	0.86	-0.2
1,158,359	+		HMPREF1058_RS20515	0.86	+1.7
1,158,371	-		HMPREF1058_RS20515	0.88	+1.7
1,158,396	+				+0.7
1,158,397	-				-0.5
1,158,493	-				+0.8
1,158,531	+				+0.4
1,158,534	+				-0.3
1,158,535	-				+1.8
1,158,541	+				+1.2
1,158,577	-				-1.3
1,158,577	-				-0.9
1,158,593	+				+0.4
1,158,594	-				-0.2
1,158,611	+				-1.4
1,158,611	+				-0.9
1,158,616	+				-0.7
1,158,621	+				-0.7
1,158,622	-				-0.3
1,158,637	+				-1.1
1,158,637	+				-2.1
1,158,638	-				-2.4
1,158,642	-				-1.1
1,158,661	+				-0.4
1,158,666	-				+1.4
1,158,666	-				-0.4
1,158,675	+				-0.7
1,158,675	+				+0.9
1,158,681	+				+1.5
1,158,734	+				-1.0
1,158,752	+				-2.8
1,158,752	+				-0.9
1,158,775	-				-3.2
1,158,848	+				+0.3
1,158,849	-				-0.2
1,158,849	-				-0.6
1,158,927	-		HMPREF1058_RS14610	0.14	-3.1
1,158,927	-		HMPREF1058_RS14610	0.14	-0.7
1,158,928	+		HMPREF1058_RS14610	0.14	+0.0
1,158,951	+		HMPREF1058_RS14610	0.16	-1.7
1,158,957	-		HMPREF1058_RS14610	0.16	+3.4
1,158,985	+		HMPREF1058_RS14610	0.18	-0.9
1,158,986	-		HMPREF1058_RS14610	0.18	-2.4
1,158,992	+		HMPREF1058_RS14610	0.19	-3.2
1,158,993	-		HMPREF1058_RS14610	0.19	-1.0
1,159,048	-		HMPREF1058_RS14610	0.23	-3.5
1,159,052	-		HMPREF1058_RS14610	0.24	-2.6
1,159,077	+		HMPREF1058_RS14610	0.26	-3.6
1,159,077	+		HMPREF1058_RS14610	0.26	-2.0
1,159,077	+		HMPREF1058_RS14610	0.26	-4.0
1,159,077	+		HMPREF1058_RS14610	0.26	-1.8
1,159,078	-		HMPREF1058_RS14610	0.26	-3.4
1,159,078	-		HMPREF1058_RS14610	0.26	-1.4
1,159,082	+		HMPREF1058_RS14610	0.26	-2.2
1,159,082	+		HMPREF1058_RS14610	0.26	-2.2
1,159,093	+		HMPREF1058_RS14610	0.27	-1.1
1,159,226	+		HMPREF1058_RS14610	0.37	-3.1
1,159,244	+		HMPREF1058_RS14610	0.39	-1.8
1,159,246	+		HMPREF1058_RS14610	0.39	-3.4
1,159,247	-		HMPREF1058_RS14610	0.39	-0.7
1,159,302	+		HMPREF1058_RS14610	0.43	+0.0
1,159,303	-				+1.0
1,159,303	-		HMPREF1058_RS14610	0.43	-4.2
1,159,405	-		HMPREF1058_RS14610	0.51	+3.4
1,159,488	+		HMPREF1058_RS14610	0.58	+1.4
1,159,489	-		HMPREF1058_RS14610	0.58	-2.6
1,159,489	-		HMPREF1058_RS14610	0.58	-1.9
1,159,500	-		HMPREF1058_RS14610	0.59	-2.3
1,159,585	+		HMPREF1058_RS14610	0.66	-1.9
1,159,585	+		HMPREF1058_RS14610	0.66	-5.0
1,159,586	-		HMPREF1058_RS14610	0.66	-3.2
1,159,613	+		HMPREF1058_RS14610	0.68	-1.6
1,159,613	+		HMPREF1058_RS14610	0.68	-2.7
1,159,614	-		HMPREF1058_RS14610	0.68	-3.7
1,159,617	+		HMPREF1058_RS14610	0.68	-3.2
1,159,618	-		HMPREF1058_RS14610	0.68	-3.9
1,159,618	-		HMPREF1058_RS14610	0.68	-4.8
1,159,618	-		HMPREF1058_RS14610	0.68	-1.0
1,159,618	-		HMPREF1058_RS14610	0.68	-4.0
1,159,625	-		HMPREF1058_RS14610	0.69	-2.6
1,159,626	+		HMPREF1058_RS14610	0.69	+1.5
1,159,662	+		HMPREF1058_RS14610	0.72	-2.9
1,159,829	-		HMPREF1058_RS14610	0.85	-2.7
1,159,900	-				-2.6
1,159,900	-				-0.8
1,159,900	-				-3.5
1,159,934	-				+0.7
1,159,934	-				-1.5
1,160,003	-				-3.4
1,160,003	-				-0.5
1,160,074	+				+0.1
1,160,074	+				+1.2
1,160,074	+				-1.1
1,160,075	-				-0.7
1,160,075	-				-2.5
1,160,087	+				-2.1
1,160,088	-				+2.4
1,160,094	+		HMPREF1058_RS14605	0.11	-1.4
1,160,094	+		HMPREF1058_RS14605	0.11	+0.6
1,160,094	+		HMPREF1058_RS14605	0.11	+4.4
1,160,099	-		HMPREF1058_RS14605	0.12	+1.4
1,160,100	+		HMPREF1058_RS14605	0.12	+2.0
1,160,100	+		HMPREF1058_RS14605	0.12	+0.3
1,160,101	+		HMPREF1058_RS14605	0.13	+0.5
1,160,101	-		HMPREF1058_RS14605	0.13	+1.7
1,160,101	-		HMPREF1058_RS14605	0.13	+0.4
1,160,101	-		HMPREF1058_RS14605	0.13	+2.6
1,160,101	-		HMPREF1058_RS14605	0.13	-0.4
1,160,205	-		HMPREF1058_RS14605	0.34	+2.0
1,160,272	+		HMPREF1058_RS14605	0.47	+1.4
1,160,311	+		HMPREF1058_RS14605	0.55	+2.4
1,160,313	+		HMPREF1058_RS14605	0.56	+0.9
1,160,358	+		HMPREF1058_RS14605	0.65	+0.8
1,160,404	+		HMPREF1058_RS14605	0.74	+1.2
1,160,405	-		HMPREF1058_RS14605	0.74	+1.5
1,160,405	-		HMPREF1058_RS14605	0.74	-0.3
1,160,405	-		HMPREF1058_RS14605	0.74	+0.5
1,160,416	+		HMPREF1058_RS14605	0.77	+1.0
1,160,416	+		HMPREF1058_RS14605	0.77	+4.4
1,160,416	+		HMPREF1058_RS14605	0.77	+0.6
1,160,416	+		HMPREF1058_RS14605	0.77	+1.6
1,160,417	-		HMPREF1058_RS14605	0.77	+1.0
1,160,481	-				+0.7
1,160,550	-				-0.7
1,160,550	-				-0.2
1,160,588	+				-2.1
1,160,741	+		HMPREF1058_RS14600	0.27	-0.0
1,160,838	-		HMPREF1058_RS14600	0.41	-0.1
1,160,893	-		HMPREF1058_RS14600	0.50	-0.4
1,160,897	+		HMPREF1058_RS14600	0.50	-0.2
1,160,963	+		HMPREF1058_RS14600	0.60	-2.9
1,160,964	-				+1.0
1,160,973	-				+3.4
1,161,002	+		HMPREF1058_RS14600	0.66	-0.9