Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14550

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,171,172	+		HMPREF1058_RS14560	0.74	-2.0
1,171,172	+		HMPREF1058_RS14560	0.74	-3.0
1,171,234	-		HMPREF1058_RS14560	0.78	-1.3
1,171,262	-		HMPREF1058_RS14560	0.80	-2.5
1,171,285	-		HMPREF1058_RS14560	0.82	+2.8
1,171,285	-		HMPREF1058_RS14560	0.82	+0.2
1,171,315	+				+3.4
1,171,375	+		HMPREF1058_RS14560	0.88	-0.9
1,171,376	-		HMPREF1058_RS14560	0.88	-1.1
1,171,438	+				-1.8
1,171,572	+				-2.0
1,171,572	+				-0.1
1,171,688	+		HMPREF1058_RS14555	0.24	+4.4
1,171,815	-		HMPREF1058_RS14555	0.45	+1.0
1,171,939	+		HMPREF1058_RS14555	0.66	-2.6
1,171,940	-		HMPREF1058_RS14555	0.66	+0.8
1,172,126	+				-2.3
1,172,126	+				-0.2
1,172,156	+				+0.7
1,172,161	+				+0.6
1,172,182	+				-2.1
1,172,183	-				-0.6
1,172,275	-				-2.2
1,172,277	+				-1.9
1,172,288	+				-0.8
1,172,411	-		HMPREF1058_RS14550	0.19	-2.3
1,172,535	-		HMPREF1058_RS14550	0.27	-0.2
1,172,548	-		HMPREF1058_RS14550	0.28	-1.2
1,172,582	+		HMPREF1058_RS14550	0.31	-0.4
1,172,628	+		HMPREF1058_RS14550	0.34	-1.6
1,172,689	-		HMPREF1058_RS14550	0.39	-1.8
1,172,722	+		HMPREF1058_RS14550	0.41	-1.8
1,172,722	+		HMPREF1058_RS14550	0.41	-1.7
1,172,722	+		HMPREF1058_RS14550	0.41	-1.4
1,172,723	-		HMPREF1058_RS14550	0.41	-3.7
1,172,809	+		HMPREF1058_RS14550	0.47	-2.5
1,172,809	+		HMPREF1058_RS14550	0.47	-0.4
1,172,810	-		HMPREF1058_RS14550	0.47	-3.0
1,172,812	-		HMPREF1058_RS14550	0.48	-0.5
1,172,878	-		HMPREF1058_RS14550	0.52	-2.7
1,172,878	-		HMPREF1058_RS14550	0.52	-1.7
1,172,979	+		HMPREF1058_RS14550	0.60	-2.6
1,172,979	+		HMPREF1058_RS14550	0.60	-1.8
1,172,980	-		HMPREF1058_RS14550	0.60	+4.4
1,172,980	-		HMPREF1058_RS14550	0.60	-1.0
1,172,980	-		HMPREF1058_RS14550	0.60	-1.8
1,172,981	+		HMPREF1058_RS14550	0.60	-2.2
1,173,036	+		HMPREF1058_RS14550	0.64	-0.6
1,173,066	+		HMPREF1058_RS14550	0.66	-2.6
1,173,066	+		HMPREF1058_RS14550	0.66	-1.9
1,173,148	-		HMPREF1058_RS14550	0.72	-1.8
1,173,148	-		HMPREF1058_RS14550	0.72	-2.3
1,173,205	+		HMPREF1058_RS14550	0.76	-0.4
1,173,205	+		HMPREF1058_RS14550	0.76	+1.6
1,173,206	-		HMPREF1058_RS14550	0.76	-2.6
1,173,217	-		HMPREF1058_RS14550	0.77	-3.9
1,173,360	+		HMPREF1058_RS14550	0.87	-0.6
1,173,361	-		HMPREF1058_RS14550	0.87	-0.4
1,173,366	-		HMPREF1058_RS14550	0.88	-0.9
1,173,366	-		HMPREF1058_RS14550	0.88	-2.3
1,173,368	-		HMPREF1058_RS14550	0.88	-1.4
1,173,368	-		HMPREF1058_RS14550	0.88	-0.8
1,173,457	+				-2.0
1,173,543	+				-0.1
1,173,543	+				-2.3
1,173,550	+				+1.0
1,173,551	-				-0.7
1,173,554	-				-1.9
1,173,584	+				-0.1
1,173,584	+				-0.6
1,173,584	+				-2.7
1,173,586	+				-2.4
1,173,586	+				-0.4
1,173,587	-				-1.0
1,173,587	-				+0.2
1,173,618	-				-0.1
1,173,635	-				-0.4
1,173,637	+				-2.2
1,173,638	-				+3.0
1,173,665	+				-0.6
1,173,665	+				-1.8
1,173,690	-				-0.4
1,173,888	+		HMPREF1058_RS14545	0.22	-2.5
1,173,890	+		HMPREF1058_RS14545	0.22	-1.1
1,173,933	-		HMPREF1058_RS14545	0.25	-1.3
1,173,987	+		HMPREF1058_RS14545	0.29	-2.4
1,173,987	+		HMPREF1058_RS14545	0.29	-2.7
1,173,988	-		HMPREF1058_RS14545	0.29	-2.6
1,174,079	+		HMPREF1058_RS14545	0.35	-1.5
1,174,131	+		HMPREF1058_RS14545	0.38	-1.4
1,174,132	-		HMPREF1058_RS14545	0.39	-2.7
1,174,287	-		HMPREF1058_RS14545	0.49	-3.2
1,174,396	-		HMPREF1058_RS14545	0.56	+1.0
1,174,439	+		HMPREF1058_RS14545	0.59	-2.6
1,174,479	+		HMPREF1058_RS14545	0.62	-2.4
1,174,480	-		HMPREF1058_RS14545	0.62	-2.1
1,174,488	+		HMPREF1058_RS14545	0.62	-2.1
1,174,489	-		HMPREF1058_RS14545	0.62	-4.3
1,174,489	-		HMPREF1058_RS14545	0.62	-1.5
1,174,514	-		HMPREF1058_RS14545	0.64	-0.9