Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14075

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,290,837	+				-1.9
1,290,858	+				-0.8
1,290,963	+				-0.7
1,290,977	+				+2.2
1,290,977	+				+1.4
1,290,979	+				-1.8
1,290,980	+				-1.6
1,290,980	+				+0.5
1,291,509	+		HMPREF1058_RS14080	0.64	+0.7
1,291,650	+		HMPREF1058_RS14080	0.83	+1.6
1,291,770	+				-1.2
1,291,776	+				+0.4
1,292,120	+		HMPREF1058_RS14075	0.37	-0.2
1,292,209	+		HMPREF1058_RS14075	0.47	-1.1
1,292,363	+		HMPREF1058_RS14075	0.64	-3.5
1,292,384	+		HMPREF1058_RS14075	0.67	-1.4
1,292,388	+		HMPREF1058_RS14075	0.67	+1.5
1,292,691	+				-1.6
1,292,691	+				-0.5
1,292,694	+				-2.0
1,292,694	+				+1.4
1,293,486	+				+1.5