Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13675

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,401,967	+				+0.8
1,401,967	+				-0.3
1,401,968	-				-1.4
1,401,968	-				-0.1
1,401,968	-				-0.6
1,401,968	-				-0.1
1,401,968	-				-1.5
1,402,000	+				-0.1
1,402,001	-				-1.2
1,402,101	+				-1.5
1,402,101	+				+3.4
1,402,101	+				+0.9
1,402,102	-				-0.4
1,402,103	+				-0.3
1,402,104	-				-0.4
1,402,198	+				-1.3
1,402,201	-				+0.5
1,402,269	+				+0.4
1,402,345	+				-0.4
1,402,382	-				-0.7
1,402,413	-				-1.0
1,402,430	+		HMPREF1058_RS20225	0.13	+0.4
1,402,457	+		HMPREF1058_RS20225	0.19	-0.6
1,402,561	-		HMPREF1058_RS20225	0.43	+0.0
1,402,628	+		HMPREF1058_RS20225	0.58	-1.4
1,402,631	-		HMPREF1058_RS20225	0.59	-0.0
1,402,741	+		HMPREF1058_RS20225	0.84	-0.3
1,402,745	-		HMPREF1058_RS20225	0.85	+0.6
1,402,748	+		HMPREF1058_RS20225	0.85	+0.8
1,402,774	+				+0.1
1,402,835	-				+0.3
1,402,842	+				-0.6
1,402,892	+				-0.6
1,402,905	-				+0.2
1,402,915	-				-1.2
1,402,915	-				-1.5
1,402,915	-				-0.9
1,402,918	-				-2.0
1,402,923	+				-3.2
1,402,935	+				-0.8
1,402,987	+		HMPREF1058_RS13675	0.15	-0.2
1,403,001	-		HMPREF1058_RS13675	0.18	-1.2
1,403,080	-		HMPREF1058_RS13675	0.40	-1.0
1,403,080	-		HMPREF1058_RS13675	0.40	-0.8
1,403,152	+		HMPREF1058_RS13675	0.60	+1.2
1,403,155	+		HMPREF1058_RS13675	0.61	+0.5
1,403,169	+		HMPREF1058_RS13675	0.65	-0.3
1,403,170	-		HMPREF1058_RS13675	0.65	-1.4
1,403,170	-		HMPREF1058_RS13675	0.65	+0.1
1,403,170	-		HMPREF1058_RS13675	0.65	-2.6
1,403,267	+				-1.3
1,403,268	-				-0.8
1,403,268	-				+0.3
1,403,320	+				-1.3
1,403,322	+				-0.6
1,403,333	+				-1.0
1,403,422	-		HMPREF1058_RS20540	0.32	+0.2
1,403,428	+		HMPREF1058_RS20540	0.34	-0.7
1,403,526	+		HMPREF1058_RS20540	0.70	+0.1
1,403,532	-		HMPREF1058_RS20540	0.72	-0.2
1,403,534	+		HMPREF1058_RS20540	0.72	-0.2
1,403,619	+				+0.3
1,403,619	+				+1.1
1,403,707	+				-0.5
1,403,734	-				-1.5
1,403,785	-				+1.9
1,403,798	-				+1.3
1,403,820	+				+0.2
1,403,865	+		HMPREF1058_RS13670	0.10	-0.1
1,403,881	-		HMPREF1058_RS13670	0.11	-0.3
1,403,967	+		HMPREF1058_RS13670	0.15	-0.7
1,403,967	+		HMPREF1058_RS13670	0.15	-0.8
1,403,967	+		HMPREF1058_RS13670	0.15	+0.4
1,403,979	+		HMPREF1058_RS13670	0.15	-1.9
1,404,032	+		HMPREF1058_RS13670	0.18	-1.8
1,404,033	-		HMPREF1058_RS13670	0.18	-0.8
1,404,080	+		HMPREF1058_RS13670	0.20	-1.5
1,404,081	-		HMPREF1058_RS13670	0.20	+1.1
1,404,102	-		HMPREF1058_RS13670	0.21	-2.3
1,404,163	-		HMPREF1058_RS13670	0.23	+2.6
1,404,163	-		HMPREF1058_RS13670	0.23	+0.4
1,404,249	+		HMPREF1058_RS13670	0.27	-0.4
1,404,250	-		HMPREF1058_RS13670	0.27	+2.8
1,404,251	+		HMPREF1058_RS13670	0.27	-1.2
1,404,274	-		HMPREF1058_RS13670	0.28	-2.5