Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13250

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,546,427	-		HMPREF1058_RS13255	0.48	-0.6
1,546,456	+		HMPREF1058_RS13255	0.50	-1.0
1,546,537	-		HMPREF1058_RS13255	0.55	-0.7
1,546,548	+		HMPREF1058_RS13255	0.56	-0.1
1,546,549	-		HMPREF1058_RS13255	0.56	-2.2
1,546,660	+		HMPREF1058_RS13255	0.63	+0.4
1,546,675	-		HMPREF1058_RS13255	0.64	-1.6
1,546,675	-		HMPREF1058_RS13255	0.64	+0.6
1,546,675	-		HMPREF1058_RS13255	0.64	-0.6
1,546,676	+		HMPREF1058_RS13255	0.64	-1.5
1,546,677	-		HMPREF1058_RS13255	0.64	+0.1
1,546,678	+		HMPREF1058_RS13255	0.64	-2.3
1,546,679	-		HMPREF1058_RS13255	0.64	-0.7
1,546,679	-		HMPREF1058_RS13255	0.64	-1.1
1,546,679	-		HMPREF1058_RS13255	0.64	-1.7
1,546,679	-		HMPREF1058_RS13255	0.64	-2.5
1,546,690	-		HMPREF1058_RS13255	0.65	+0.1
1,546,779	-		HMPREF1058_RS13255	0.70	+0.1
1,546,791	-		HMPREF1058_RS13255	0.71	-0.2
1,546,809	-		HMPREF1058_RS13255	0.72	+0.2
1,546,861	+		HMPREF1058_RS13255	0.76	-0.2
1,546,893	-		HMPREF1058_RS13255	0.78	-0.1
1,546,907	-		HMPREF1058_RS13255	0.78	-0.0
1,546,926	+		HMPREF1058_RS13255	0.80	-0.6
1,547,095	+				+0.2
1,547,095	+				-0.5
1,547,121	-				-0.4
1,547,136	+				-1.4
1,547,136	+				-1.0
1,547,137	-				+2.1
1,547,142	-				+1.4
1,547,142	-				-0.6
1,547,194	+				-1.3
1,547,498	-		HMPREF1058_RS13250	0.28	-1.1
1,547,678	-		HMPREF1058_RS13250	0.78	-2.0
1,547,678	-		HMPREF1058_RS13250	0.78	+0.2
1,547,725	-				-0.5
1,547,837	-				-1.6
1,547,879	-				+0.3
1,547,879	-				-0.3
1,547,882	-				+4.4
1,547,882	-				-0.9
1,548,043	+				-0.8
1,548,157	+		HMPREF1058_RS13245	0.28	+0.6
1,548,172	-		HMPREF1058_RS13245	0.31	-0.8
1,548,239	-		HMPREF1058_RS13245	0.45	-1.4
1,548,269	-		HMPREF1058_RS13245	0.51	-0.3
1,548,297	+		HMPREF1058_RS13245	0.57	-0.5
1,548,407	-		HMPREF1058_RS13245	0.79	-1.0
1,548,562	-				-1.2
1,548,562	-				+0.2
1,548,589	-				-2.3
1,548,628	-				-1.4
1,548,628	-				+1.2
1,548,628	-				-1.6
1,548,657	-				-0.8
1,548,657	-				+0.1
1,548,686	-				-1.9
1,548,695	-				-1.4
1,548,721	+				-0.8
1,548,756	+				-0.6