Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13085

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,595,407	+		HMPREF1058_RS13090	0.50	+1.7
1,595,443	-		HMPREF1058_RS13090	0.56	-0.1
1,595,557	+		HMPREF1058_RS13090	0.77	+0.0
1,595,689	+				+1.1
1,595,710	+				-0.1
1,595,710	+				-1.9
1,595,846	+				+1.1
1,595,847	-				-0.6
1,595,886	-				+0.0
1,595,937	+				+0.0
1,595,937	+				-1.0
1,595,938	-				+0.7
1,595,939	+				-1.2
1,595,941	+				+0.6
1,595,945	+				-0.5
1,595,945	+				-1.7
1,595,946	-				-1.8
1,595,948	+				-0.5
1,595,949	-				-1.3
1,595,949	-				+1.3
1,595,981	-				-0.5
1,595,982	+				-0.5
1,595,990	+				-0.4
1,595,997	+				+1.1
1,596,051	+				-0.0
1,596,051	+				-0.6
1,596,052	-				-2.5
1,596,055	+				+0.0
1,596,056	-				+0.9
1,596,128	-				+0.1
1,596,130	+				-0.9
1,596,174	-				-0.5
1,596,276	-				-0.1
1,596,325	+				+0.8
1,596,333	+				+0.7
1,596,334	-				+0.7
1,596,340	+				+0.3
1,596,374	+				-2.1
1,596,381	-				-0.1
1,596,450	+		HMPREF1058_RS13085	0.40	-1.4
1,596,451	-		HMPREF1058_RS13085	0.40	-1.6
1,596,546	+		HMPREF1058_RS13085	0.84	-3.1
1,596,575	+				-0.7
1,596,636	+				-0.4
1,596,664	-				-1.5
1,596,725	+				-0.6
1,596,730	+				-0.2
1,596,763	-				-0.9
1,596,833	-				-0.0
1,596,833	-				-1.9
1,596,843	+				-1.0
1,596,843	+				-0.3
1,596,843	+				+0.6
1,596,963	-				-2.0
1,596,963	-				-1.2
1,596,966	+				+0.6
1,596,966	+				+0.2
1,596,967	-				+0.1
1,596,967	-				-0.4
1,597,007	+		HMPREF1058_RS13080	0.16	-1.1
1,597,008	-		HMPREF1058_RS13080	0.16	-0.7
1,597,093	+		HMPREF1058_RS13080	0.54	-0.0
1,597,127	+		HMPREF1058_RS13080	0.69	+1.3
1,597,158	-		HMPREF1058_RS13080	0.83	-0.7
1,597,178	+				-0.6
1,597,179	-				-1.0
1,597,203	-				-0.7
1,597,264	+				-1.1
1,597,265	-				-0.1
1,597,308	-				-0.3
1,597,308	-				-0.6
1,597,311	+				+0.1
1,597,311	+				-0.6
1,597,311	+				-0.9
1,597,312	-				-0.4
1,597,333	+				+0.2
1,597,333	+				-0.6
1,597,459	-				-0.7
1,597,472	+				-0.7
1,597,506	+				-1.8
1,597,506	+				-1.4
1,597,507	-				+0.4
1,597,531	+				-1.6
1,597,553	-				-1.8
1,597,556	+				-1.0
1,597,556	+				+0.4
1,597,578	+				-1.0