Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12995

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,620,129	-		HMPREF1058_RS13000	0.46	-0.6
1,620,133	-		HMPREF1058_RS13000	0.46	+3.8
1,620,183	+		HMPREF1058_RS13000	0.49	+0.4
1,620,184	-		HMPREF1058_RS13000	0.49	+0.9
1,620,187	+		HMPREF1058_RS13000	0.49	+1.0
1,620,188	-		HMPREF1058_RS13000	0.49	+0.1
1,620,265	-		HMPREF1058_RS13000	0.54	-1.1
1,620,275	+		HMPREF1058_RS13000	0.55	-0.1
1,620,307	-		HMPREF1058_RS13000	0.57	-0.1
1,620,346	-		HMPREF1058_RS13000	0.59	-1.7
1,620,350	-		HMPREF1058_RS13000	0.59	+0.9
1,620,408	-		HMPREF1058_RS13000	0.63	-0.0
1,620,474	+		HMPREF1058_RS13000	0.67	-0.6
1,620,474	+		HMPREF1058_RS13000	0.67	-1.4
1,620,475	-		HMPREF1058_RS13000	0.67	-0.5
1,620,480	+		HMPREF1058_RS13000	0.68	+0.2
1,620,503	+		HMPREF1058_RS13000	0.69	-0.7
1,620,505	+		HMPREF1058_RS13000	0.69	+0.1
1,620,505	+		HMPREF1058_RS13000	0.69	-1.2
1,620,506	-		HMPREF1058_RS13000	0.69	-0.1
1,620,510	-		HMPREF1058_RS13000	0.69	+0.2
1,620,687	+		HMPREF1058_RS13000	0.80	+0.1
1,620,688	-		HMPREF1058_RS13000	0.80	-1.1
1,620,724	+		HMPREF1058_RS13000	0.83	-1.2
1,620,728	-		HMPREF1058_RS13000	0.83	+0.4
1,620,728	-		HMPREF1058_RS13000	0.83	-1.9
1,620,728	-		HMPREF1058_RS13000	0.83	+0.1
1,620,753	-		HMPREF1058_RS13000	0.85	+2.2
1,620,754	+		HMPREF1058_RS13000	0.85	+1.7
1,620,755	-		HMPREF1058_RS13000	0.85	-0.6
1,620,829	+		HMPREF1058_RS13000	0.89	-1.1
1,620,829	+		HMPREF1058_RS13000	0.89	-0.7
1,620,830	-		HMPREF1058_RS13000	0.89	-0.6
1,620,830	-		HMPREF1058_RS13000	0.89	-0.0
1,620,830	-		HMPREF1058_RS13000	0.89	-1.3
1,620,831	+		HMPREF1058_RS13000	0.89	+0.5
1,620,831	+		HMPREF1058_RS13000	0.89	+0.1
1,620,832	-		HMPREF1058_RS13000	0.89	+0.4
1,620,832	-		HMPREF1058_RS13000	0.89	+1.1
1,620,833	+		HMPREF1058_RS13000	0.89	+0.3
1,620,833	+		HMPREF1058_RS13000	0.89	+1.0
1,620,834	-		HMPREF1058_RS13000	0.90	+1.0
1,620,834	-		HMPREF1058_RS13000	0.90	-0.4
1,620,834	-		HMPREF1058_RS13000	0.90	+1.1
1,620,834	-		HMPREF1058_RS13000	0.90	+1.4
1,620,838	-		HMPREF1058_RS13000	0.90	+1.2
1,620,992	-				-0.5
1,621,001	+				-0.2
1,621,001	+				+0.1
1,621,002	-				-0.7
1,621,046	+				-2.5
1,621,160	+		HMPREF1058_RS12995	0.19	+0.1
1,621,164	+		HMPREF1058_RS12995	0.20	-0.4
1,621,164	+		HMPREF1058_RS12995	0.20	+0.2
1,621,224	-				+1.9
1,621,224	-		HMPREF1058_RS12995	0.41	+1.4
1,621,239	-				+1.6
1,621,239	-		HMPREF1058_RS12995	0.47	-0.0
1,621,260	+		HMPREF1058_RS12995	0.54	-1.5
1,621,393	+				+1.0
1,621,398	+				-2.1
1,621,398	+				-0.5
1,621,398	+				+0.1
1,621,399	-				+1.8
1,621,454	+		HMPREF1058_RS12990	0.29	+0.1
1,621,454	+		HMPREF1058_RS12990	0.29	+0.9
1,621,457	-		HMPREF1058_RS12990	0.30	-0.2
1,621,522	+		HMPREF1058_RS12990	0.65	-0.9
1,621,602	+				+0.8
1,621,602	+				-1.3
1,621,646	+				+0.1
1,621,690	+				+1.6
1,621,725	+				+0.8
1,621,736	+				+1.8
1,621,739	+				-1.6
1,621,739	+				-0.5
1,621,960	+		HMPREF1058_RS12985	0.10	+1.6
1,621,961	-		HMPREF1058_RS12985	0.11	-0.2
1,622,049	+		HMPREF1058_RS12985	0.19	-0.0
1,622,049	+		HMPREF1058_RS12985	0.19	-1.1
1,622,049	+		HMPREF1058_RS12985	0.19	-0.9
1,622,050	-		HMPREF1058_RS12985	0.19	-0.1
1,622,063	+		HMPREF1058_RS12985	0.20	-0.3
1,622,154	+		HMPREF1058_RS12985	0.29	+1.5
1,622,155	-		HMPREF1058_RS12985	0.29	+2.4
1,622,183	+		HMPREF1058_RS12985	0.32	-0.2
1,622,244	+		HMPREF1058_RS12985	0.38	-1.4
1,622,250	+		HMPREF1058_RS12985	0.38	+0.6
1,622,251	-		HMPREF1058_RS12985	0.38	-0.0
1,622,251	-		HMPREF1058_RS12985	0.38	-0.6
1,622,263	+		HMPREF1058_RS12985	0.39	-0.1
1,622,264	-		HMPREF1058_RS12985	0.39	+0.9
1,622,265	+		HMPREF1058_RS12985	0.40	+0.7
1,622,265	+		HMPREF1058_RS12985	0.40	+0.9
1,622,267	+		HMPREF1058_RS12985	0.40	-0.6
1,622,267	+		HMPREF1058_RS12985	0.40	-1.5
1,622,322	-		HMPREF1058_RS12985	0.45	-1.4