Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12695 and HMPREF1058_RS12690 are separated by 130 nucleotides HMPREF1058_RS12690 and HMPREF1058_RS12685 are separated by 2 nucleotides HMPREF1058_RS12685 and HMPREF1058_RS12680 are separated by 24 nucleotides
HMPREF1058_RS12695: HMPREF1058_RS12695 - tripeptidyl aminopeptidase, at 53,900 to 55,210
_RS12695
HMPREF1058_RS12690: HMPREF1058_RS12690 - acyl-CoA carboxylase subunit beta, at 55,341 to 56,873
_RS12690
HMPREF1058_RS12685: HMPREF1058_RS12685 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 56,876 to 57,391
_RS12685
HMPREF1058_RS12680: HMPREF1058_RS12680 - acetyl-CoA carboxylase biotin carboxylase subunit, at 57,416 to 58,927
_RS12680
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 54.351 kb on + strand, within HMPREF1058_RS12695 at 54.372 kb on + strand, within HMPREF1058_RS12695 at 54.373 kb on - strand, within HMPREF1058_RS12695 at 54.373 kb on - strand, within HMPREF1058_RS12695 at 54.440 kb on + strand, within HMPREF1058_RS12695 at 54.473 kb on + strand, within HMPREF1058_RS12695 at 54.586 kb on - strand, within HMPREF1058_RS12695 at 54.586 kb on - strand, within HMPREF1058_RS12695 at 54.646 kb on + strand, within HMPREF1058_RS12695 at 54.646 kb on + strand, within HMPREF1058_RS12695 at 54.647 kb on - strand, within HMPREF1058_RS12695 at 54.647 kb on - strand, within HMPREF1058_RS12695 at 54.647 kb on - strand, within HMPREF1058_RS12695 at 54.661 kb on + strand, within HMPREF1058_RS12695 at 54.695 kb on + strand, within HMPREF1058_RS12695 at 54.729 kb on + strand, within HMPREF1058_RS12695 at 54.866 kb on + strand, within HMPREF1058_RS12695 at 54.936 kb on + strand, within HMPREF1058_RS12695 at 54.936 kb on + strand, within HMPREF1058_RS12695 at 54.981 kb on + strand, within HMPREF1058_RS12695 at 54.981 kb on + strand, within HMPREF1058_RS12695 at 54.981 kb on + strand, within HMPREF1058_RS12695 at 54.985 kb on + strand, within HMPREF1058_RS12695 at 54.985 kb on + strand, within HMPREF1058_RS12695 at 54.986 kb on - strand, within HMPREF1058_RS12695 at 55.031 kb on + strand, within HMPREF1058_RS12695 at 55.031 kb on + strand, within HMPREF1058_RS12695 at 55.034 kb on - strand, within HMPREF1058_RS12695 at 55.106 kb on + strand at 55.339 kb on + strand at 55.353 kb on - strand at 55.388 kb on + strand at 55.443 kb on - strand at 55.701 kb on - strand, within HMPREF1058_RS12690
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 54,351 + HMPREF1058_RS12695 0.34 -1.1 54,372 + HMPREF1058_RS12695 0.36 -0.0 54,373 - HMPREF1058_RS12695 0.36 +2.2 54,373 - HMPREF1058_RS12695 0.36 +0.5 54,440 + HMPREF1058_RS12695 0.41 -0.8 54,473 + HMPREF1058_RS12695 0.44 +1.4 54,586 - HMPREF1058_RS12695 0.52 -2.9 54,586 - HMPREF1058_RS12695 0.52 -2.1 54,646 + HMPREF1058_RS12695 0.57 +0.6 54,646 + HMPREF1058_RS12695 0.57 -0.5 54,647 - HMPREF1058_RS12695 0.57 -0.5 54,647 - HMPREF1058_RS12695 0.57 -2.1 54,647 - HMPREF1058_RS12695 0.57 +0.1 54,661 + HMPREF1058_RS12695 0.58 -1.1 54,695 + HMPREF1058_RS12695 0.61 -1.0 54,729 + HMPREF1058_RS12695 0.63 -0.9 54,866 + HMPREF1058_RS12695 0.74 -1.3 54,936 + HMPREF1058_RS12695 0.79 +0.5 54,936 + HMPREF1058_RS12695 0.79 -1.2 54,981 + HMPREF1058_RS12695 0.82 -0.6 54,981 + HMPREF1058_RS12695 0.82 +0.5 54,981 + HMPREF1058_RS12695 0.82 -0.6 54,985 + HMPREF1058_RS12695 0.83 +0.6 54,985 + HMPREF1058_RS12695 0.83 -0.1 54,986 - HMPREF1058_RS12695 0.83 +0.2 55,031 + HMPREF1058_RS12695 0.86 +0.6 55,031 + HMPREF1058_RS12695 0.86 +1.9 55,034 - HMPREF1058_RS12695 0.86 -3.1 55,106 + +1.3 55,339 + +0.4 55,353 - -0.1 55,388 + +3.4 55,443 - -0.1 55,701 - HMPREF1058_RS12690 0.23 -1.5
Or see this region's nucleotide sequence