Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12605 and HMPREF1058_RS20605 are separated by 40 nucleotides HMPREF1058_RS20605 and HMPREF1058_RS12600 are separated by 68 nucleotides HMPREF1058_RS12600 and HMPREF1058_RS12595 are separated by 220 nucleotides HMPREF1058_RS12595 and HMPREF1058_RS12590 are separated by 58 nucleotides
HMPREF1058_RS12605: HMPREF1058_RS12605 - HAD family hydrolase, at 71,668 to 72,288
_RS12605
HMPREF1058_RS20605: HMPREF1058_RS20605 - hypothetical protein, at 72,329 to 72,568
_RS20605
HMPREF1058_RS12600: HMPREF1058_RS12600 - hypothetical protein, at 72,637 to 72,927
_RS12600
HMPREF1058_RS12595: HMPREF1058_RS12595 - hypothetical protein, at 73,148 to 73,489
_RS12595
HMPREF1058_RS12590: HMPREF1058_RS12590 - transposase, at 73,548 to 74,468
_RS12590
Position (kb) 73
74 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 72.157 kb on - strand, within HMPREF1058_RS12605 at 72.157 kb on - strand, within HMPREF1058_RS12605 at 72.161 kb on - strand, within HMPREF1058_RS12605 at 72.166 kb on - strand, within HMPREF1058_RS12605 at 72.177 kb on + strand, within HMPREF1058_RS12605 at 72.178 kb on - strand, within HMPREF1058_RS12605 at 72.178 kb on - strand, within HMPREF1058_RS12605 at 72.219 kb on + strand, within HMPREF1058_RS12605 at 72.228 kb on + strand at 72.229 kb on - strand at 72.229 kb on - strand at 72.229 kb on - strand at 72.271 kb on - strand at 72.273 kb on - strand at 72.276 kb on + strand at 72.276 kb on + strand at 72.302 kb on + strand at 72.321 kb on - strand at 72.342 kb on + strand at 72.467 kb on + strand, within HMPREF1058_RS20605 at 72.470 kb on - strand, within HMPREF1058_RS20605 at 72.474 kb on + strand, within HMPREF1058_RS20605 at 72.475 kb on - strand, within HMPREF1058_RS20605 at 72.477 kb on + strand, within HMPREF1058_RS20605 at 72.477 kb on + strand, within HMPREF1058_RS20605 at 72.511 kb on + strand, within HMPREF1058_RS20605 at 72.511 kb on + strand, within HMPREF1058_RS20605 at 72.553 kb on - strand at 72.587 kb on - strand at 72.598 kb on + strand at 72.599 kb on - strand at 72.721 kb on - strand, within HMPREF1058_RS12600 at 72.756 kb on + strand, within HMPREF1058_RS12600 at 72.791 kb on + strand, within HMPREF1058_RS12600 at 72.850 kb on - strand, within HMPREF1058_RS12600 at 72.856 kb on - strand, within HMPREF1058_RS12600 at 72.868 kb on + strand, within HMPREF1058_RS12600 at 72.869 kb on - strand, within HMPREF1058_RS12600 at 72.870 kb on + strand, within HMPREF1058_RS12600 at 72.876 kb on + strand, within HMPREF1058_RS12600 at 72.880 kb on + strand, within HMPREF1058_RS12600 at 72.883 kb on + strand, within HMPREF1058_RS12600 at 72.884 kb on - strand, within HMPREF1058_RS12600 at 72.892 kb on + strand, within HMPREF1058_RS12600 at 72.963 kb on - strand at 73.003 kb on + strand at 73.012 kb on + strand at 73.062 kb on - strand at 73.300 kb on + strand, within HMPREF1058_RS12595 at 73.483 kb on - strand at 73.647 kb on + strand, within HMPREF1058_RS12590 at 73.647 kb on + strand, within HMPREF1058_RS12590 at 73.647 kb on + strand, within HMPREF1058_RS12590 at 73.649 kb on + strand, within HMPREF1058_RS12590 at 73.690 kb on - strand, within HMPREF1058_RS12590 at 73.690 kb on - strand, within HMPREF1058_RS12590 at 73.707 kb on - strand, within HMPREF1058_RS12590 at 73.730 kb on + strand, within HMPREF1058_RS12590 at 73.730 kb on + strand, within HMPREF1058_RS12590 at 73.730 kb on + strand, within HMPREF1058_RS12590 at 73.730 kb on + strand, within HMPREF1058_RS12590 at 73.767 kb on - strand, within HMPREF1058_RS12590 at 74.307 kb on - strand, within HMPREF1058_RS12590 at 74.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 72,157 - HMPREF1058_RS12605 0.79 -0.4 72,157 - HMPREF1058_RS12605 0.79 +0.5 72,161 - HMPREF1058_RS12605 0.79 +0.0 72,166 - HMPREF1058_RS12605 0.80 +0.9 72,177 + HMPREF1058_RS12605 0.82 +2.8 72,178 - HMPREF1058_RS12605 0.82 +0.8 72,178 - HMPREF1058_RS12605 0.82 +1.8 72,219 + HMPREF1058_RS12605 0.89 -0.3 72,228 + -1.1 72,229 - -1.3 72,229 - +1.0 72,229 - -1.7 72,271 - -1.1 72,273 - -1.7 72,276 + -0.9 72,276 + -0.8 72,302 + +0.0 72,321 - +0.1 72,342 + -0.5 72,467 + HMPREF1058_RS20605 0.57 -0.4 72,470 - HMPREF1058_RS20605 0.59 -0.2 72,474 + HMPREF1058_RS20605 0.60 +2.3 72,475 - HMPREF1058_RS20605 0.61 +0.6 72,477 + HMPREF1058_RS20605 0.62 -0.6 72,477 + HMPREF1058_RS20605 0.62 -0.4 72,511 + HMPREF1058_RS20605 0.76 -0.5 72,511 + HMPREF1058_RS20605 0.76 +0.6 72,553 - -0.9 72,587 - -2.2 72,598 + +0.5 72,599 - -0.9 72,721 - HMPREF1058_RS12600 0.29 -0.1 72,756 + HMPREF1058_RS12600 0.41 +0.0 72,791 + HMPREF1058_RS12600 0.53 -1.1 72,850 - HMPREF1058_RS12600 0.73 -1.1 72,856 - HMPREF1058_RS12600 0.75 +1.6 72,868 + HMPREF1058_RS12600 0.79 -0.2 72,869 - HMPREF1058_RS12600 0.80 -0.5 72,870 + HMPREF1058_RS12600 0.80 -0.9 72,876 + HMPREF1058_RS12600 0.82 +0.5 72,880 + HMPREF1058_RS12600 0.84 -1.1 72,883 + HMPREF1058_RS12600 0.85 +0.5 72,884 - HMPREF1058_RS12600 0.85 +0.5 72,892 + HMPREF1058_RS12600 0.88 +0.1 72,963 - -1.3 73,003 + -0.1 73,012 + -1.1 73,062 - +0.9 73,300 + HMPREF1058_RS12595 0.44 -1.3 73,483 - +0.1 73,647 + HMPREF1058_RS12590 0.11 -0.9 73,647 + HMPREF1058_RS12590 0.11 +1.4 73,647 + HMPREF1058_RS12590 0.11 +0.6 73,649 + HMPREF1058_RS12590 0.11 -0.2 73,690 - HMPREF1058_RS12590 0.15 -1.8 73,690 - HMPREF1058_RS12590 0.15 +0.7 73,707 - HMPREF1058_RS12590 0.17 -0.4 73,730 + HMPREF1058_RS12590 0.20 -0.6 73,730 + HMPREF1058_RS12590 0.20 -0.9 73,730 + HMPREF1058_RS12590 0.20 -2.1 73,730 + HMPREF1058_RS12590 0.20 -0.3 73,767 - HMPREF1058_RS12590 0.24 +0.7 74,307 - HMPREF1058_RS12590 0.82 -1.1 74,400 - +0.2
Or see this region's nucleotide sequence