Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11945 and HMPREF1058_RS11940 are separated by 378 nucleotides HMPREF1058_RS11940 and HMPREF1058_RS11935 overlap by 1 nucleotides HMPREF1058_RS11935 and HMPREF1058_RS11930 are separated by 172 nucleotides
HMPREF1058_RS11945: HMPREF1058_RS11945 - bifunctional riboflavin kinase/FAD synthetase, at 240,140 to 241,060
_RS11945
HMPREF1058_RS11940: HMPREF1058_RS11940 - DUF3836 domain-containing protein, at 241,439 to 241,861
_RS11940
HMPREF1058_RS11935: HMPREF1058_RS11935 - hypothetical protein, at 241,861 to 242,160
_RS11935
HMPREF1058_RS11930: HMPREF1058_RS11930 - CPBP family intramembrane metalloprotease, at 242,333 to 243,163
_RS11930
Position (kb) 241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 241.058 kb on + strand at 241.108 kb on - strand at 241.121 kb on + strand at 241.157 kb on + strand at 241.158 kb on - strand at 241.247 kb on - strand at 241.434 kb on + strand at 241.486 kb on - strand, within HMPREF1058_RS11940 at 241.502 kb on - strand, within HMPREF1058_RS11940 at 241.538 kb on + strand, within HMPREF1058_RS11940 at 241.539 kb on - strand, within HMPREF1058_RS11940 at 241.539 kb on - strand, within HMPREF1058_RS11940 at 241.574 kb on + strand, within HMPREF1058_RS11940 at 241.804 kb on + strand, within HMPREF1058_RS11940 at 241.930 kb on + strand, within HMPREF1058_RS11935 at 241.934 kb on + strand, within HMPREF1058_RS11935 at 241.935 kb on - strand, within HMPREF1058_RS11935 at 241.967 kb on + strand, within HMPREF1058_RS11935 at 241.997 kb on + strand, within HMPREF1058_RS11935 at 242.076 kb on + strand, within HMPREF1058_RS11935 at 242.108 kb on + strand, within HMPREF1058_RS11935 at 242.119 kb on + strand, within HMPREF1058_RS11935 at 242.120 kb on - strand, within HMPREF1058_RS11935 at 242.329 kb on + strand at 242.329 kb on + strand at 242.348 kb on - strand at 242.355 kb on + strand at 242.355 kb on + strand at 242.467 kb on - strand, within HMPREF1058_RS11930 at 242.477 kb on - strand, within HMPREF1058_RS11930 at 242.545 kb on + strand, within HMPREF1058_RS11930 at 242.584 kb on - strand, within HMPREF1058_RS11930
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 241,058 + +1.5 241,108 - +0.1 241,121 + -1.5 241,157 + +1.3 241,158 - -0.4 241,247 - +0.5 241,434 + -1.4 241,486 - HMPREF1058_RS11940 0.11 -1.2 241,502 - HMPREF1058_RS11940 0.15 +0.3 241,538 + HMPREF1058_RS11940 0.23 -3.1 241,539 - HMPREF1058_RS11940 0.24 -0.9 241,539 - HMPREF1058_RS11940 0.24 +2.1 241,574 + HMPREF1058_RS11940 0.32 +2.6 241,804 + HMPREF1058_RS11940 0.86 -0.2 241,930 + HMPREF1058_RS11935 0.23 +0.3 241,934 + HMPREF1058_RS11935 0.24 -0.0 241,935 - HMPREF1058_RS11935 0.25 -1.2 241,967 + HMPREF1058_RS11935 0.35 -1.0 241,997 + HMPREF1058_RS11935 0.45 -1.0 242,076 + HMPREF1058_RS11935 0.72 +0.6 242,108 + HMPREF1058_RS11935 0.82 +0.3 242,119 + HMPREF1058_RS11935 0.86 -0.3 242,120 - HMPREF1058_RS11935 0.86 -0.2 242,329 + +0.9 242,329 + -1.0 242,348 - +0.3 242,355 + -0.3 242,355 + +0.5 242,467 - HMPREF1058_RS11930 0.16 -0.5 242,477 - HMPREF1058_RS11930 0.17 -0.3 242,545 + HMPREF1058_RS11930 0.26 +0.3 242,584 - HMPREF1058_RS11930 0.30 +0.1
Or see this region's nucleotide sequence