Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11005 and HMPREF1058_RS11000 overlap by 25 nucleotides HMPREF1058_RS11000 and HMPREF1058_RS10995 are separated by 18 nucleotides HMPREF1058_RS10995 and HMPREF1058_RS10990 are separated by 15 nucleotides
HMPREF1058_RS11005: HMPREF1058_RS11005 - DedA family protein, at 504,713 to 505,180
_RS11005
HMPREF1058_RS11000: HMPREF1058_RS11000 - hypothetical protein, at 505,156 to 506,091
_RS11000
HMPREF1058_RS10995: HMPREF1058_RS10995 - phosphoribosylamine--glycine ligase, at 506,110 to 507,378
_RS10995
HMPREF1058_RS10990: HMPREF1058_RS10990 - S9 family peptidase, at 507,394 to 509,607
_RS10990
Position (kb) 506
507
508 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 505.117 kb on + strand, within HMPREF1058_RS11005 at 505.188 kb on - strand at 505.191 kb on + strand at 505.201 kb on + strand at 505.207 kb on + strand at 505.288 kb on + strand, within HMPREF1058_RS11000 at 505.288 kb on + strand, within HMPREF1058_RS11000 at 505.289 kb on - strand, within HMPREF1058_RS11000 at 505.387 kb on + strand, within HMPREF1058_RS11000 at 505.399 kb on + strand, within HMPREF1058_RS11000 at 505.408 kb on + strand, within HMPREF1058_RS11000 at 505.596 kb on - strand, within HMPREF1058_RS11000 at 505.689 kb on - strand, within HMPREF1058_RS11000 at 505.746 kb on + strand, within HMPREF1058_RS11000 at 505.772 kb on + strand, within HMPREF1058_RS11000 at 505.773 kb on - strand, within HMPREF1058_RS11000 at 505.875 kb on - strand, within HMPREF1058_RS11000 at 505.894 kb on - strand, within HMPREF1058_RS11000 at 505.894 kb on - strand, within HMPREF1058_RS11000 at 506.020 kb on + strand at 506.020 kb on + strand at 506.020 kb on + strand at 506.020 kb on + strand at 506.020 kb on + strand at 506.020 kb on + strand at 506.021 kb on - strand at 506.021 kb on - strand at 506.022 kb on + strand at 506.022 kb on + strand at 506.023 kb on - strand at 506.065 kb on + strand at 506.066 kb on - strand at 506.287 kb on + strand, within HMPREF1058_RS10995 at 506.287 kb on + strand, within HMPREF1058_RS10995 at 506.378 kb on - strand, within HMPREF1058_RS10995 at 506.395 kb on + strand, within HMPREF1058_RS10995 at 506.395 kb on + strand, within HMPREF1058_RS10995 at 506.395 kb on + strand, within HMPREF1058_RS10995 at 506.396 kb on - strand, within HMPREF1058_RS10995 at 506.506 kb on + strand, within HMPREF1058_RS10995 at 506.545 kb on - strand, within HMPREF1058_RS10995 at 506.572 kb on - strand, within HMPREF1058_RS10995 at 506.574 kb on - strand, within HMPREF1058_RS10995 at 506.671 kb on + strand, within HMPREF1058_RS10995 at 506.671 kb on + strand, within HMPREF1058_RS10995 at 506.671 kb on + strand, within HMPREF1058_RS10995 at 506.726 kb on + strand, within HMPREF1058_RS10995 at 506.791 kb on + strand, within HMPREF1058_RS10995 at 506.942 kb on + strand, within HMPREF1058_RS10995 at 506.942 kb on + strand, within HMPREF1058_RS10995 at 506.943 kb on - strand at 506.943 kb on - strand, within HMPREF1058_RS10995 at 507.143 kb on + strand, within HMPREF1058_RS10995 at 507.143 kb on + strand, within HMPREF1058_RS10995 at 507.190 kb on + strand, within HMPREF1058_RS10995 at 507.190 kb on + strand, within HMPREF1058_RS10995 at 507.190 kb on + strand, within HMPREF1058_RS10995 at 507.191 kb on - strand, within HMPREF1058_RS10995 at 507.191 kb on - strand, within HMPREF1058_RS10995 at 507.205 kb on + strand, within HMPREF1058_RS10995 at 507.206 kb on - strand, within HMPREF1058_RS10995 at 507.226 kb on - strand, within HMPREF1058_RS10995 at 507.259 kb on + strand at 507.264 kb on + strand at 507.265 kb on - strand at 507.265 kb on - strand at 507.364 kb on + strand at 507.462 kb on + strand at 507.466 kb on - strand at 507.482 kb on + strand at 507.668 kb on + strand, within HMPREF1058_RS10990 at 507.680 kb on + strand, within HMPREF1058_RS10990 at 507.686 kb on - strand, within HMPREF1058_RS10990 at 507.686 kb on - strand, within HMPREF1058_RS10990 at 507.686 kb on - strand, within HMPREF1058_RS10990 at 507.693 kb on - strand, within HMPREF1058_RS10990 at 507.695 kb on + strand, within HMPREF1058_RS10990 at 507.696 kb on - strand, within HMPREF1058_RS10990 at 507.725 kb on - strand, within HMPREF1058_RS10990 at 507.800 kb on - strand, within HMPREF1058_RS10990 at 507.898 kb on - strand, within HMPREF1058_RS10990 at 507.959 kb on + strand, within HMPREF1058_RS10990 at 507.978 kb on - strand, within HMPREF1058_RS10990 at 507.982 kb on - strand, within HMPREF1058_RS10990 at 508.001 kb on + strand, within HMPREF1058_RS10990 at 508.002 kb on - strand, within HMPREF1058_RS10990 at 508.050 kb on - strand, within HMPREF1058_RS10990 at 508.109 kb on + strand, within HMPREF1058_RS10990 at 508.110 kb on - strand, within HMPREF1058_RS10990 at 508.110 kb on - strand, within HMPREF1058_RS10990 at 508.112 kb on - strand, within HMPREF1058_RS10990 at 508.112 kb on - strand, within HMPREF1058_RS10990 at 508.165 kb on - strand, within HMPREF1058_RS10990 at 508.169 kb on + strand, within HMPREF1058_RS10990 at 508.169 kb on + strand, within HMPREF1058_RS10990 at 508.206 kb on + strand, within HMPREF1058_RS10990 at 508.266 kb on + strand, within HMPREF1058_RS10990 at 508.269 kb on - strand, within HMPREF1058_RS10990 at 508.269 kb on - strand, within HMPREF1058_RS10990 at 508.283 kb on + strand, within HMPREF1058_RS10990 at 508.283 kb on + strand, within HMPREF1058_RS10990 at 508.306 kb on + strand, within HMPREF1058_RS10990 at 508.306 kb on + strand, within HMPREF1058_RS10990 at 508.307 kb on - strand, within HMPREF1058_RS10990 at 508.370 kb on + strand, within HMPREF1058_RS10990
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 505,117 + HMPREF1058_RS11005 0.86 +1.3 505,188 - +1.4 505,191 + -1.8 505,201 + -1.9 505,207 + -1.9 505,288 + HMPREF1058_RS11000 0.14 -0.1 505,288 + HMPREF1058_RS11000 0.14 +2.2 505,289 - HMPREF1058_RS11000 0.14 -0.6 505,387 + HMPREF1058_RS11000 0.25 +4.5 505,399 + HMPREF1058_RS11000 0.26 +1.4 505,408 + HMPREF1058_RS11000 0.27 -0.6 505,596 - HMPREF1058_RS11000 0.47 +0.7 505,689 - HMPREF1058_RS11000 0.57 -0.8 505,746 + HMPREF1058_RS11000 0.63 -0.7 505,772 + HMPREF1058_RS11000 0.66 -0.7 505,773 - HMPREF1058_RS11000 0.66 +1.5 505,875 - HMPREF1058_RS11000 0.77 +2.2 505,894 - HMPREF1058_RS11000 0.79 +1.4 505,894 - HMPREF1058_RS11000 0.79 +0.6 506,020 + -0.3 506,020 + -0.2 506,020 + -1.7 506,020 + -1.7 506,020 + -0.8 506,020 + +0.9 506,021 - -0.4 506,021 - -1.0 506,022 + -1.1 506,022 + -2.3 506,023 - -1.6 506,065 + -1.4 506,066 - -0.6 506,287 + HMPREF1058_RS10995 0.14 -0.3 506,287 + HMPREF1058_RS10995 0.14 -1.4 506,378 - HMPREF1058_RS10995 0.21 -0.8 506,395 + HMPREF1058_RS10995 0.22 +0.1 506,395 + HMPREF1058_RS10995 0.22 -2.6 506,395 + HMPREF1058_RS10995 0.22 -0.0 506,396 - HMPREF1058_RS10995 0.23 -1.7 506,506 + HMPREF1058_RS10995 0.31 -0.7 506,545 - HMPREF1058_RS10995 0.34 -3.8 506,572 - HMPREF1058_RS10995 0.36 -0.0 506,574 - HMPREF1058_RS10995 0.37 -0.9 506,671 + HMPREF1058_RS10995 0.44 -1.6 506,671 + HMPREF1058_RS10995 0.44 +1.5 506,671 + HMPREF1058_RS10995 0.44 -2.4 506,726 + HMPREF1058_RS10995 0.49 -2.2 506,791 + HMPREF1058_RS10995 0.54 +1.2 506,942 + HMPREF1058_RS10995 0.66 +0.5 506,942 + HMPREF1058_RS10995 0.66 +1.9 506,943 - +0.9 506,943 - HMPREF1058_RS10995 0.66 -1.8 507,143 + HMPREF1058_RS10995 0.81 +0.8 507,143 + HMPREF1058_RS10995 0.81 -0.9 507,190 + HMPREF1058_RS10995 0.85 -2.4 507,190 + HMPREF1058_RS10995 0.85 -1.1 507,190 + HMPREF1058_RS10995 0.85 +0.4 507,191 - HMPREF1058_RS10995 0.85 -1.2 507,191 - HMPREF1058_RS10995 0.85 -2.3 507,205 + HMPREF1058_RS10995 0.86 +0.9 507,206 - HMPREF1058_RS10995 0.86 +1.7 507,226 - HMPREF1058_RS10995 0.88 -2.7 507,259 + -0.4 507,264 + -1.0 507,265 - -1.6 507,265 - -1.6 507,364 + +0.9 507,462 + +1.7 507,466 - +0.6 507,482 + -1.2 507,668 + HMPREF1058_RS10990 0.12 -0.0 507,680 + HMPREF1058_RS10990 0.13 -0.3 507,686 - HMPREF1058_RS10990 0.13 -0.4 507,686 - HMPREF1058_RS10990 0.13 +1.6 507,686 - HMPREF1058_RS10990 0.13 +0.8 507,693 - HMPREF1058_RS10990 0.14 +0.0 507,695 + HMPREF1058_RS10990 0.14 +0.5 507,696 - HMPREF1058_RS10990 0.14 -0.1 507,725 - HMPREF1058_RS10990 0.15 +0.1 507,800 - HMPREF1058_RS10990 0.18 +1.1 507,898 - HMPREF1058_RS10990 0.23 -0.2 507,959 + HMPREF1058_RS10990 0.26 +1.5 507,978 - HMPREF1058_RS10990 0.26 -0.8 507,982 - HMPREF1058_RS10990 0.27 -0.8 508,001 + HMPREF1058_RS10990 0.27 -1.2 508,002 - HMPREF1058_RS10990 0.27 +0.4 508,050 - HMPREF1058_RS10990 0.30 +0.7 508,109 + HMPREF1058_RS10990 0.32 +1.7 508,110 - HMPREF1058_RS10990 0.32 +0.5 508,110 - HMPREF1058_RS10990 0.32 -1.3 508,112 - HMPREF1058_RS10990 0.32 -1.2 508,112 - HMPREF1058_RS10990 0.32 +0.7 508,165 - HMPREF1058_RS10990 0.35 +0.2 508,169 + HMPREF1058_RS10990 0.35 -1.7 508,169 + HMPREF1058_RS10990 0.35 -0.7 508,206 + HMPREF1058_RS10990 0.37 +0.3 508,266 + HMPREF1058_RS10990 0.39 +1.9 508,269 - HMPREF1058_RS10990 0.40 +0.4 508,269 - HMPREF1058_RS10990 0.40 +0.8 508,283 + HMPREF1058_RS10990 0.40 -0.8 508,283 + HMPREF1058_RS10990 0.40 -0.8 508,306 + HMPREF1058_RS10990 0.41 +2.2 508,306 + HMPREF1058_RS10990 0.41 -0.2 508,307 - HMPREF1058_RS10990 0.41 -0.3 508,370 + HMPREF1058_RS10990 0.44 -1.2
Or see this region's nucleotide sequence