Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10515 and HMPREF1058_RS10510 are separated by 2 nucleotides HMPREF1058_RS10510 and HMPREF1058_RS10505 are separated by 171 nucleotides
HMPREF1058_RS10515: HMPREF1058_RS10515 - tRNA 2-thiouridine(34) synthase MnmA, at 648,915 to 649,970
_RS10515
HMPREF1058_RS10510: HMPREF1058_RS10510 - virulence RhuM family protein, at 649,973 to 650,443
_RS10510
HMPREF1058_RS10505: HMPREF1058_RS10505 - DUF4981 domain-containing protein, at 650,615 to 653,944
_RS10505
Position (kb) 649
650
651 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 649.009 kb on - strand at 649.009 kb on - strand at 649.071 kb on + strand, within HMPREF1058_RS10515 at 649.072 kb on - strand, within HMPREF1058_RS10515 at 649.072 kb on - strand, within HMPREF1058_RS10515 at 649.233 kb on + strand, within HMPREF1058_RS10515 at 649.490 kb on + strand, within HMPREF1058_RS10515 at 649.490 kb on + strand, within HMPREF1058_RS10515 at 649.491 kb on - strand, within HMPREF1058_RS10515 at 649.491 kb on - strand, within HMPREF1058_RS10515 at 649.601 kb on - strand, within HMPREF1058_RS10515 at 649.601 kb on - strand, within HMPREF1058_RS10515 at 649.669 kb on + strand, within HMPREF1058_RS10515 at 649.669 kb on + strand, within HMPREF1058_RS10515 at 649.670 kb on - strand, within HMPREF1058_RS10515 at 649.713 kb on - strand, within HMPREF1058_RS10515 at 649.713 kb on - strand, within HMPREF1058_RS10515 at 649.768 kb on + strand, within HMPREF1058_RS10515 at 649.769 kb on - strand at 649.769 kb on - strand, within HMPREF1058_RS10515 at 649.847 kb on - strand, within HMPREF1058_RS10515 at 649.975 kb on - strand at 649.993 kb on + strand at 650.069 kb on + strand, within HMPREF1058_RS10510 at 650.070 kb on - strand, within HMPREF1058_RS10510 at 650.084 kb on + strand, within HMPREF1058_RS10510 at 650.085 kb on - strand, within HMPREF1058_RS10510 at 650.188 kb on + strand, within HMPREF1058_RS10510 at 650.189 kb on - strand, within HMPREF1058_RS10510 at 650.191 kb on - strand, within HMPREF1058_RS10510 at 650.194 kb on - strand, within HMPREF1058_RS10510 at 650.298 kb on - strand, within HMPREF1058_RS10510 at 650.339 kb on + strand, within HMPREF1058_RS10510 at 650.343 kb on - strand, within HMPREF1058_RS10510 at 650.416 kb on - strand at 650.420 kb on + strand at 650.479 kb on - strand at 650.549 kb on + strand at 650.549 kb on + strand at 650.578 kb on + strand at 650.579 kb on - strand at 650.587 kb on + strand at 650.608 kb on + strand at 650.737 kb on + strand at 650.737 kb on + strand at 650.738 kb on - strand at 650.738 kb on - strand at 650.741 kb on + strand at 650.742 kb on - strand at 650.793 kb on - strand at 650.793 kb on - strand at 650.873 kb on - strand at 650.946 kb on - strand at 651.024 kb on + strand, within HMPREF1058_RS10505 at 651.025 kb on - strand, within HMPREF1058_RS10505 at 651.025 kb on - strand, within HMPREF1058_RS10505 at 651.025 kb on - strand, within HMPREF1058_RS10505 at 651.096 kb on + strand, within HMPREF1058_RS10505 at 651.241 kb on + strand, within HMPREF1058_RS10505 at 651.241 kb on + strand, within HMPREF1058_RS10505 at 651.287 kb on - strand, within HMPREF1058_RS10505 at 651.322 kb on - strand, within HMPREF1058_RS10505 at 651.328 kb on + strand, within HMPREF1058_RS10505 at 651.366 kb on + strand, within HMPREF1058_RS10505 at 651.378 kb on - strand, within HMPREF1058_RS10505 at 651.380 kb on + strand, within HMPREF1058_RS10505 at 651.381 kb on - strand, within HMPREF1058_RS10505 at 651.409 kb on + strand, within HMPREF1058_RS10505
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 649,009 - -0.4 649,009 - -0.3 649,071 + HMPREF1058_RS10515 0.15 -1.2 649,072 - HMPREF1058_RS10515 0.15 +0.9 649,072 - HMPREF1058_RS10515 0.15 +1.9 649,233 + HMPREF1058_RS10515 0.30 -1.2 649,490 + HMPREF1058_RS10515 0.54 +0.1 649,490 + HMPREF1058_RS10515 0.54 -0.1 649,491 - HMPREF1058_RS10515 0.55 -1.1 649,491 - HMPREF1058_RS10515 0.55 +0.9 649,601 - HMPREF1058_RS10515 0.65 -0.4 649,601 - HMPREF1058_RS10515 0.65 +0.3 649,669 + HMPREF1058_RS10515 0.71 +0.0 649,669 + HMPREF1058_RS10515 0.71 +0.2 649,670 - HMPREF1058_RS10515 0.71 +0.5 649,713 - HMPREF1058_RS10515 0.76 +0.0 649,713 - HMPREF1058_RS10515 0.76 -1.6 649,768 + HMPREF1058_RS10515 0.81 -0.9 649,769 - +0.9 649,769 - HMPREF1058_RS10515 0.81 -1.0 649,847 - HMPREF1058_RS10515 0.88 +0.9 649,975 - -0.4 649,993 + -0.9 650,069 + HMPREF1058_RS10510 0.20 -0.7 650,070 - HMPREF1058_RS10510 0.21 +0.2 650,084 + HMPREF1058_RS10510 0.24 +3.8 650,085 - HMPREF1058_RS10510 0.24 +1.8 650,188 + HMPREF1058_RS10510 0.46 +2.2 650,189 - HMPREF1058_RS10510 0.46 +0.8 650,191 - HMPREF1058_RS10510 0.46 -1.5 650,194 - HMPREF1058_RS10510 0.47 -0.5 650,298 - HMPREF1058_RS10510 0.69 +0.5 650,339 + HMPREF1058_RS10510 0.78 -1.0 650,343 - HMPREF1058_RS10510 0.79 -1.2 650,416 - -1.0 650,420 + -0.4 650,479 - +0.8 650,549 + -0.5 650,549 + +0.2 650,578 + -0.1 650,579 - -0.6 650,587 + -0.9 650,608 + +0.1 650,737 + -1.4 650,737 + +0.7 650,738 - -1.0 650,738 - +0.6 650,741 + -1.7 650,742 - -1.7 650,793 - -0.9 650,793 - -1.0 650,873 - -0.0 650,946 - -0.2 651,024 + HMPREF1058_RS10505 0.12 -0.5 651,025 - HMPREF1058_RS10505 0.12 -1.0 651,025 - HMPREF1058_RS10505 0.12 +0.7 651,025 - HMPREF1058_RS10505 0.12 -0.5 651,096 + HMPREF1058_RS10505 0.14 -1.1 651,241 + HMPREF1058_RS10505 0.19 -0.1 651,241 + HMPREF1058_RS10505 0.19 -1.6 651,287 - HMPREF1058_RS10505 0.20 +1.2 651,322 - HMPREF1058_RS10505 0.21 -0.4 651,328 + HMPREF1058_RS10505 0.21 -0.7 651,366 + HMPREF1058_RS10505 0.23 -1.7 651,378 - HMPREF1058_RS10505 0.23 -1.4 651,380 + HMPREF1058_RS10505 0.23 +0.3 651,381 - HMPREF1058_RS10505 0.23 +0.8 651,409 + HMPREF1058_RS10505 0.24 -1.8
Or see this region's nucleotide sequence