Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10385 and HMPREF1058_RS21450 overlap by 8 nucleotides HMPREF1058_RS21450 and HMPREF1058_RS10380 are separated by 8 nucleotides HMPREF1058_RS10380 and HMPREF1058_RS10375 are separated by 7 nucleotides HMPREF1058_RS10375 and HMPREF1058_RS10370 are separated by 3 nucleotides HMPREF1058_RS10370 and HMPREF1058_RS10365 overlap by 4 nucleotides HMPREF1058_RS10365 and HMPREF1058_RS10360 overlap by 1 nucleotides
HMPREF1058_RS10385: HMPREF1058_RS10385 - tape measure protein, at 680,626 to 685,464
_RS10385
HMPREF1058_RS21450: HMPREF1058_RS21450 - hypothetical protein, at 685,457 to 685,660
_RS21450
HMPREF1058_RS10380: HMPREF1058_RS10380 - hypothetical protein, at 685,669 to 686,202
_RS10380
HMPREF1058_RS10375: HMPREF1058_RS10375 - hypothetical protein, at 686,210 to 686,683
_RS10375
HMPREF1058_RS10370: HMPREF1058_RS10370 - hypothetical protein, at 686,687 to 687,094
_RS10370
HMPREF1058_RS10365: HMPREF1058_RS10365 - hypothetical protein, at 687,091 to 687,525
_RS10365
HMPREF1058_RS10360: HMPREF1058_RS10360 - hypothetical protein, at 687,525 to 687,836
_RS10360
Position (kb) 686
687 Strain fitness (log2 ratio) -2
-1
0
1
2 at 685.223 kb on - strand at 685.327 kb on - strand at 685.458 kb on + strand at 685.482 kb on - strand, within HMPREF1058_RS21450 at 685.526 kb on + strand, within HMPREF1058_RS21450 at 685.591 kb on - strand, within HMPREF1058_RS21450 at 685.627 kb on + strand, within HMPREF1058_RS21450 at 685.646 kb on - strand at 685.646 kb on - strand at 685.647 kb on + strand at 685.647 kb on + strand at 685.668 kb on - strand at 685.685 kb on - strand at 685.735 kb on + strand, within HMPREF1058_RS10380 at 685.736 kb on - strand, within HMPREF1058_RS10380 at 685.736 kb on - strand, within HMPREF1058_RS10380 at 685.775 kb on - strand, within HMPREF1058_RS10380 at 685.922 kb on - strand, within HMPREF1058_RS10380 at 685.935 kb on + strand, within HMPREF1058_RS10380 at 685.936 kb on - strand, within HMPREF1058_RS10380 at 685.940 kb on - strand, within HMPREF1058_RS10380 at 685.966 kb on - strand, within HMPREF1058_RS10380 at 685.966 kb on - strand, within HMPREF1058_RS10380 at 685.969 kb on + strand, within HMPREF1058_RS10380 at 685.969 kb on + strand, within HMPREF1058_RS10380 at 685.989 kb on + strand, within HMPREF1058_RS10380 at 686.005 kb on - strand, within HMPREF1058_RS10380 at 686.129 kb on - strand, within HMPREF1058_RS10380 at 686.141 kb on + strand, within HMPREF1058_RS10380 at 686.142 kb on - strand, within HMPREF1058_RS10380 at 686.161 kb on - strand at 686.179 kb on + strand at 686.179 kb on + strand at 686.179 kb on + strand at 686.179 kb on + strand at 686.180 kb on - strand at 686.180 kb on - strand at 686.180 kb on - strand at 686.202 kb on + strand at 686.216 kb on + strand at 686.242 kb on - strand at 686.290 kb on - strand, within HMPREF1058_RS10375 at 686.295 kb on - strand, within HMPREF1058_RS10375 at 686.435 kb on - strand, within HMPREF1058_RS10375 at 686.458 kb on + strand, within HMPREF1058_RS10375 at 686.459 kb on - strand, within HMPREF1058_RS10375 at 686.665 kb on + strand at 686.666 kb on - strand at 686.717 kb on + strand at 686.718 kb on - strand at 686.735 kb on - strand, within HMPREF1058_RS10370 at 686.872 kb on + strand, within HMPREF1058_RS10370 at 686.902 kb on + strand, within HMPREF1058_RS10370 at 686.902 kb on + strand, within HMPREF1058_RS10370 at 686.906 kb on + strand, within HMPREF1058_RS10370 at 686.963 kb on + strand, within HMPREF1058_RS10370 at 686.963 kb on + strand, within HMPREF1058_RS10370 at 686.963 kb on + strand, within HMPREF1058_RS10370 at 686.966 kb on - strand, within HMPREF1058_RS10370 at 687.171 kb on + strand, within HMPREF1058_RS10365 at 687.171 kb on + strand, within HMPREF1058_RS10365 at 687.187 kb on + strand, within HMPREF1058_RS10365 at 687.187 kb on + strand, within HMPREF1058_RS10365 at 687.188 kb on - strand, within HMPREF1058_RS10365 at 687.191 kb on + strand at 687.191 kb on + strand, within HMPREF1058_RS10365 at 687.213 kb on + strand, within HMPREF1058_RS10365 at 687.214 kb on - strand, within HMPREF1058_RS10365 at 687.217 kb on + strand, within HMPREF1058_RS10365 at 687.217 kb on + strand, within HMPREF1058_RS10365 at 687.231 kb on + strand, within HMPREF1058_RS10365 at 687.318 kb on + strand, within HMPREF1058_RS10365 at 687.381 kb on + strand, within HMPREF1058_RS10365 at 687.432 kb on + strand, within HMPREF1058_RS10365 at 687.433 kb on - strand, within HMPREF1058_RS10365 at 687.444 kb on + strand, within HMPREF1058_RS10365 at 687.445 kb on - strand, within HMPREF1058_RS10365 at 687.445 kb on - strand, within HMPREF1058_RS10365 at 687.489 kb on + strand at 687.540 kb on + strand at 687.605 kb on + strand, within HMPREF1058_RS10360 at 687.614 kb on + strand, within HMPREF1058_RS10360 at 687.664 kb on + strand, within HMPREF1058_RS10360
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 685,223 - -2.7 685,327 - -0.9 685,458 + -0.2 685,482 - HMPREF1058_RS21450 0.12 +0.5 685,526 + HMPREF1058_RS21450 0.34 -0.0 685,591 - HMPREF1058_RS21450 0.66 +0.6 685,627 + HMPREF1058_RS21450 0.83 -0.5 685,646 - -1.1 685,646 - -0.0 685,647 + -0.8 685,647 + -0.6 685,668 - -1.3 685,685 - -0.6 685,735 + HMPREF1058_RS10380 0.12 -1.4 685,736 - HMPREF1058_RS10380 0.13 +0.5 685,736 - HMPREF1058_RS10380 0.13 -0.1 685,775 - HMPREF1058_RS10380 0.20 -2.5 685,922 - HMPREF1058_RS10380 0.47 +0.4 685,935 + HMPREF1058_RS10380 0.50 -0.4 685,936 - HMPREF1058_RS10380 0.50 +0.2 685,940 - HMPREF1058_RS10380 0.51 +0.5 685,966 - HMPREF1058_RS10380 0.56 -0.9 685,966 - HMPREF1058_RS10380 0.56 +1.9 685,969 + HMPREF1058_RS10380 0.56 -1.4 685,969 + HMPREF1058_RS10380 0.56 +0.2 685,989 + HMPREF1058_RS10380 0.60 -0.3 686,005 - HMPREF1058_RS10380 0.63 -0.8 686,129 - HMPREF1058_RS10380 0.86 +1.5 686,141 + HMPREF1058_RS10380 0.88 -0.3 686,142 - HMPREF1058_RS10380 0.89 +0.1 686,161 - -0.2 686,179 + +1.7 686,179 + -0.8 686,179 + -0.3 686,179 + +1.2 686,180 - -1.9 686,180 - +0.7 686,180 - -0.4 686,202 + -0.0 686,216 + -0.2 686,242 - -1.2 686,290 - HMPREF1058_RS10375 0.17 -0.2 686,295 - HMPREF1058_RS10375 0.18 -1.8 686,435 - HMPREF1058_RS10375 0.47 -0.1 686,458 + HMPREF1058_RS10375 0.52 -1.5 686,459 - HMPREF1058_RS10375 0.53 +0.2 686,665 + -1.0 686,666 - -0.0 686,717 + -1.4 686,718 - +0.5 686,735 - HMPREF1058_RS10370 0.12 +1.4 686,872 + HMPREF1058_RS10370 0.45 -0.6 686,902 + HMPREF1058_RS10370 0.53 -0.6 686,902 + HMPREF1058_RS10370 0.53 +0.9 686,906 + HMPREF1058_RS10370 0.54 +0.1 686,963 + HMPREF1058_RS10370 0.68 -0.8 686,963 + HMPREF1058_RS10370 0.68 -1.1 686,963 + HMPREF1058_RS10370 0.68 -1.0 686,966 - HMPREF1058_RS10370 0.68 +0.5 687,171 + HMPREF1058_RS10365 0.18 +2.1 687,171 + HMPREF1058_RS10365 0.18 +0.9 687,187 + HMPREF1058_RS10365 0.22 +0.1 687,187 + HMPREF1058_RS10365 0.22 +0.2 687,188 - HMPREF1058_RS10365 0.22 -1.0 687,191 + +1.5 687,191 + HMPREF1058_RS10365 0.23 -0.4 687,213 + HMPREF1058_RS10365 0.28 +0.2 687,214 - HMPREF1058_RS10365 0.28 -1.2 687,217 + HMPREF1058_RS10365 0.29 +0.3 687,217 + HMPREF1058_RS10365 0.29 +0.5 687,231 + HMPREF1058_RS10365 0.32 +0.1 687,318 + HMPREF1058_RS10365 0.52 -0.2 687,381 + HMPREF1058_RS10365 0.67 -0.2 687,432 + HMPREF1058_RS10365 0.78 +0.4 687,433 - HMPREF1058_RS10365 0.79 +1.8 687,444 + HMPREF1058_RS10365 0.81 -0.2 687,445 - HMPREF1058_RS10365 0.81 -1.8 687,445 - HMPREF1058_RS10365 0.81 +0.3 687,489 + +0.6 687,540 + -1.4 687,605 + HMPREF1058_RS10360 0.26 -0.4 687,614 + HMPREF1058_RS10360 0.29 +1.2 687,664 + HMPREF1058_RS10360 0.45 +0.3
Or see this region's nucleotide sequence