Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10345 and HMPREF1058_RS10340 are separated by 13 nucleotides HMPREF1058_RS10340 and HMPREF1058_RS10335 are separated by 11 nucleotides HMPREF1058_RS10335 and HMPREF1058_RS10330 are separated by 378 nucleotides HMPREF1058_RS10330 and HMPREF1058_RS21615 are separated by 3 nucleotides HMPREF1058_RS21615 and HMPREF1058_RS10325 are separated by 41 nucleotides
HMPREF1058_RS10345: HMPREF1058_RS10345 - hypothetical protein, at 688,530 to 689,759
_RS10345
HMPREF1058_RS10340: HMPREF1058_RS10340 - hypothetical protein, at 689,773 to 690,420
_RS10340
HMPREF1058_RS10335: HMPREF1058_RS10335 - hypothetical protein, at 690,432 to 691,019
_RS10335
HMPREF1058_RS10330: HMPREF1058_RS10330 - hypothetical protein, at 691,398 to 691,763
_RS10330
HMPREF1058_RS21615: HMPREF1058_RS21615 - hypothetical protein, at 691,767 to 691,907
_RS21615
HMPREF1058_RS10325: HMPREF1058_RS10325 - hypothetical protein, at 691,949 to 692,188
_RS10325
Position (kb) 690
691
692 Strain fitness (log2 ratio) -2
-1
0
1
2 at 689.447 kb on + strand, within HMPREF1058_RS10345 at 689.456 kb on + strand, within HMPREF1058_RS10345 at 689.457 kb on - strand, within HMPREF1058_RS10345 at 689.457 kb on - strand, within HMPREF1058_RS10345 at 689.563 kb on + strand, within HMPREF1058_RS10345 at 689.564 kb on - strand, within HMPREF1058_RS10345 at 689.577 kb on - strand, within HMPREF1058_RS10345 at 689.577 kb on - strand, within HMPREF1058_RS10345 at 689.751 kb on - strand at 689.751 kb on - strand at 689.762 kb on - strand at 689.879 kb on + strand, within HMPREF1058_RS10340 at 689.879 kb on + strand, within HMPREF1058_RS10340 at 689.879 kb on + strand, within HMPREF1058_RS10340 at 689.898 kb on + strand, within HMPREF1058_RS10340 at 690.052 kb on + strand, within HMPREF1058_RS10340 at 690.052 kb on + strand, within HMPREF1058_RS10340 at 690.096 kb on + strand, within HMPREF1058_RS10340 at 690.140 kb on - strand, within HMPREF1058_RS10340 at 690.198 kb on + strand, within HMPREF1058_RS10340 at 690.304 kb on - strand, within HMPREF1058_RS10340 at 690.541 kb on - strand, within HMPREF1058_RS10335 at 690.565 kb on + strand, within HMPREF1058_RS10335 at 690.566 kb on - strand, within HMPREF1058_RS10335 at 690.868 kb on - strand, within HMPREF1058_RS10335 at 690.955 kb on + strand, within HMPREF1058_RS10335 at 690.980 kb on + strand at 691.253 kb on - strand at 691.253 kb on - strand at 691.337 kb on - strand at 691.337 kb on - strand at 691.455 kb on - strand, within HMPREF1058_RS10330 at 691.482 kb on - strand, within HMPREF1058_RS10330 at 691.509 kb on - strand, within HMPREF1058_RS10330 at 691.599 kb on - strand, within HMPREF1058_RS10330 at 691.688 kb on - strand, within HMPREF1058_RS10330 at 691.688 kb on - strand, within HMPREF1058_RS10330 at 691.777 kb on - strand at 691.843 kb on - strand, within HMPREF1058_RS21615 at 691.889 kb on - strand, within HMPREF1058_RS21615 at 691.934 kb on - strand at 691.987 kb on + strand, within HMPREF1058_RS10325 at 691.987 kb on + strand, within HMPREF1058_RS10325 at 691.988 kb on - strand, within HMPREF1058_RS10325 at 691.988 kb on - strand, within HMPREF1058_RS10325
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 689,447 + HMPREF1058_RS10345 0.75 -0.2 689,456 + HMPREF1058_RS10345 0.75 -0.9 689,457 - HMPREF1058_RS10345 0.75 -1.5 689,457 - HMPREF1058_RS10345 0.75 +1.3 689,563 + HMPREF1058_RS10345 0.84 +1.7 689,564 - HMPREF1058_RS10345 0.84 +0.1 689,577 - HMPREF1058_RS10345 0.85 -0.6 689,577 - HMPREF1058_RS10345 0.85 -0.1 689,751 - -1.1 689,751 - -1.6 689,762 - +0.6 689,879 + HMPREF1058_RS10340 0.16 +0.7 689,879 + HMPREF1058_RS10340 0.16 +2.1 689,879 + HMPREF1058_RS10340 0.16 -0.2 689,898 + HMPREF1058_RS10340 0.19 +1.6 690,052 + HMPREF1058_RS10340 0.43 -0.0 690,052 + HMPREF1058_RS10340 0.43 -0.1 690,096 + HMPREF1058_RS10340 0.50 -0.1 690,140 - HMPREF1058_RS10340 0.57 -2.1 690,198 + HMPREF1058_RS10340 0.66 +0.4 690,304 - HMPREF1058_RS10340 0.82 +0.1 690,541 - HMPREF1058_RS10335 0.19 +0.9 690,565 + HMPREF1058_RS10335 0.23 -1.3 690,566 - HMPREF1058_RS10335 0.23 -2.5 690,868 - HMPREF1058_RS10335 0.74 -1.4 690,955 + HMPREF1058_RS10335 0.89 -0.9 690,980 + -0.2 691,253 - +1.4 691,253 - -1.7 691,337 - -0.6 691,337 - -0.2 691,455 - HMPREF1058_RS10330 0.16 -0.7 691,482 - HMPREF1058_RS10330 0.23 +0.5 691,509 - HMPREF1058_RS10330 0.30 +2.3 691,599 - HMPREF1058_RS10330 0.55 +0.0 691,688 - HMPREF1058_RS10330 0.79 -1.1 691,688 - HMPREF1058_RS10330 0.79 +0.3 691,777 - -1.6 691,843 - HMPREF1058_RS21615 0.54 -1.3 691,889 - HMPREF1058_RS21615 0.87 -0.3 691,934 - +0.7 691,987 + HMPREF1058_RS10325 0.16 +1.4 691,987 + HMPREF1058_RS10325 0.16 -1.0 691,988 - HMPREF1058_RS10325 0.16 -0.8 691,988 - HMPREF1058_RS10325 0.16 -2.1
Or see this region's nucleotide sequence