Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10235 and HMPREF1058_RS10230 overlap by 14 nucleotides HMPREF1058_RS10230 and HMPREF1058_RS10225 are separated by 103 nucleotides HMPREF1058_RS10225 and HMPREF1058_RS10220 are separated by 36 nucleotides HMPREF1058_RS10220 and HMPREF1058_RS10215 overlap by 23 nucleotides
HMPREF1058_RS10235: HMPREF1058_RS10235 - phage portal protein, at 704,011 to 705,438
_RS10235
HMPREF1058_RS10230: HMPREF1058_RS10230 - hypothetical protein, at 705,425 to 705,892
_RS10230
HMPREF1058_RS10225: HMPREF1058_RS10225 - hypothetical protein, at 705,996 to 706,235
_RS10225
HMPREF1058_RS10220: HMPREF1058_RS10220 - hypothetical protein, at 706,272 to 706,883
_RS10220
HMPREF1058_RS10215: HMPREF1058_RS10215 - DUF4417 domain-containing protein, at 706,861 to 707,979
_RS10215
Position (kb) 706
707 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 705.272 kb on + strand, within HMPREF1058_RS10235 at 705.412 kb on + strand at 705.637 kb on + strand, within HMPREF1058_RS10230 at 705.739 kb on + strand, within HMPREF1058_RS10230 at 705.868 kb on + strand at 706.080 kb on + strand, within HMPREF1058_RS10225 at 706.080 kb on + strand, within HMPREF1058_RS10225 at 706.295 kb on + strand at 706.319 kb on + strand at 706.346 kb on + strand, within HMPREF1058_RS10220 at 706.631 kb on + strand, within HMPREF1058_RS10220 at 706.712 kb on + strand, within HMPREF1058_RS10220 at 706.712 kb on + strand, within HMPREF1058_RS10220 at 706.764 kb on + strand, within HMPREF1058_RS10220 at 706.823 kb on + strand at 706.831 kb on + strand at 706.831 kb on + strand at 706.899 kb on + strand at 706.908 kb on + strand at 706.935 kb on + strand at 707.057 kb on + strand, within HMPREF1058_RS10215 at 707.108 kb on + strand, within HMPREF1058_RS10215 at 707.144 kb on + strand, within HMPREF1058_RS10215 at 707.144 kb on + strand, within HMPREF1058_RS10215 at 707.144 kb on + strand, within HMPREF1058_RS10215 at 707.144 kb on + strand, within HMPREF1058_RS10215 at 707.229 kb on + strand, within HMPREF1058_RS10215 at 707.330 kb on + strand, within HMPREF1058_RS10215 at 707.459 kb on + strand, within HMPREF1058_RS10215 at 707.459 kb on + strand, within HMPREF1058_RS10215 at 707.604 kb on + strand, within HMPREF1058_RS10215 at 707.704 kb on + strand, within HMPREF1058_RS10215 at 707.705 kb on - strand, within HMPREF1058_RS10215 at 707.705 kb on - strand, within HMPREF1058_RS10215 at 707.807 kb on - strand, within HMPREF1058_RS10215 at 707.811 kb on - strand, within HMPREF1058_RS10215 at 707.811 kb on - strand, within HMPREF1058_RS10215
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 705,272 + HMPREF1058_RS10235 0.88 +0.8 705,412 + +0.3 705,637 + HMPREF1058_RS10230 0.45 -1.1 705,739 + HMPREF1058_RS10230 0.67 -0.1 705,868 + -0.0 706,080 + HMPREF1058_RS10225 0.35 -1.2 706,080 + HMPREF1058_RS10225 0.35 +0.1 706,295 + +4.5 706,319 + +2.2 706,346 + HMPREF1058_RS10220 0.12 -0.4 706,631 + HMPREF1058_RS10220 0.59 -0.4 706,712 + HMPREF1058_RS10220 0.72 -0.8 706,712 + HMPREF1058_RS10220 0.72 -0.9 706,764 + HMPREF1058_RS10220 0.80 -2.1 706,823 + -0.9 706,831 + -0.0 706,831 + -1.4 706,899 + +0.3 706,908 + +0.6 706,935 + +0.5 707,057 + HMPREF1058_RS10215 0.18 -0.8 707,108 + HMPREF1058_RS10215 0.22 -0.7 707,144 + HMPREF1058_RS10215 0.25 +0.1 707,144 + HMPREF1058_RS10215 0.25 -0.9 707,144 + HMPREF1058_RS10215 0.25 -0.7 707,144 + HMPREF1058_RS10215 0.25 +0.1 707,229 + HMPREF1058_RS10215 0.33 +0.7 707,330 + HMPREF1058_RS10215 0.42 -1.2 707,459 + HMPREF1058_RS10215 0.53 -0.6 707,459 + HMPREF1058_RS10215 0.53 -0.3 707,604 + HMPREF1058_RS10215 0.66 +4.6 707,704 + HMPREF1058_RS10215 0.75 -0.3 707,705 - HMPREF1058_RS10215 0.75 +1.9 707,705 - HMPREF1058_RS10215 0.75 +0.3 707,807 - HMPREF1058_RS10215 0.85 -0.7 707,811 - HMPREF1058_RS10215 0.85 +0.6 707,811 - HMPREF1058_RS10215 0.85 -0.9
Or see this region's nucleotide sequence