Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10120 and HMPREF1058_RS10115 are separated by 254 nucleotides HMPREF1058_RS10115 and HMPREF1058_RS10110 are separated by 1 nucleotides HMPREF1058_RS10110 and HMPREF1058_RS10105 are separated by 172 nucleotides HMPREF1058_RS10105 and HMPREF1058_RS10100 are separated by 32 nucleotides HMPREF1058_RS10100 and HMPREF1058_RS10095 overlap by 1 nucleotides
HMPREF1058_RS10120: HMPREF1058_RS10120 - hypothetical protein, at 720,708 to 720,995
_RS10120
HMPREF1058_RS10115: HMPREF1058_RS10115 - helix-turn-helix transcriptional regulator, at 721,250 to 721,801
_RS10115
HMPREF1058_RS10110: HMPREF1058_RS10110 - hypothetical protein, at 721,803 to 722,048
_RS10110
HMPREF1058_RS10105: HMPREF1058_RS10105 - helix-turn-helix transcriptional regulator, at 722,221 to 722,703
_RS10105
HMPREF1058_RS10100: HMPREF1058_RS10100 - hypothetical protein, at 722,736 to 722,948
_RS10100
HMPREF1058_RS10095: HMPREF1058_RS10095 - hypothetical protein, at 722,948 to 723,205
_RS10095
Position (kb) 721
722
723 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 720.812 kb on + strand, within HMPREF1058_RS10120 at 720.871 kb on + strand, within HMPREF1058_RS10120 at 720.871 kb on + strand, within HMPREF1058_RS10120 at 720.984 kb on + strand at 720.996 kb on + strand at 721.078 kb on + strand at 721.084 kb on + strand at 721.084 kb on + strand at 721.095 kb on + strand at 721.095 kb on + strand at 721.211 kb on + strand at 721.429 kb on + strand, within HMPREF1058_RS10115 at 721.557 kb on + strand, within HMPREF1058_RS10115 at 721.559 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115 at 721.723 kb on + strand, within HMPREF1058_RS10115 at 721.759 kb on + strand at 721.979 kb on + strand, within HMPREF1058_RS10110 at 722.012 kb on + strand, within HMPREF1058_RS10110 at 722.073 kb on + strand at 722.075 kb on + strand at 722.091 kb on + strand at 722.103 kb on + strand at 722.103 kb on + strand at 722.704 kb on + strand at 722.747 kb on + strand at 722.792 kb on + strand, within HMPREF1058_RS10100 at 722.792 kb on + strand, within HMPREF1058_RS10100 at 722.815 kb on + strand, within HMPREF1058_RS10100 at 722.849 kb on + strand, within HMPREF1058_RS10100
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 720,812 + HMPREF1058_RS10120 0.36 +1.0 720,871 + HMPREF1058_RS10120 0.57 +4.5 720,871 + HMPREF1058_RS10120 0.57 -0.3 720,984 + -1.0 720,996 + +0.5 721,078 + +1.5 721,084 + -0.2 721,084 + +0.2 721,095 + -1.3 721,095 + -1.2 721,211 + +3.2 721,429 + HMPREF1058_RS10115 0.32 +1.0 721,557 + HMPREF1058_RS10115 0.56 -1.2 721,559 + HMPREF1058_RS10115 0.56 +4.5 721,656 + HMPREF1058_RS10115 0.74 -1.5 721,656 + HMPREF1058_RS10115 0.74 -0.8 721,723 + HMPREF1058_RS10115 0.86 -1.0 721,759 + +0.1 721,979 + HMPREF1058_RS10110 0.72 -0.8 722,012 + HMPREF1058_RS10110 0.85 -2.0 722,073 + -1.1 722,075 + -1.0 722,091 + +1.4 722,103 + +0.4 722,103 + -0.4 722,704 + -1.1 722,747 + +0.2 722,792 + HMPREF1058_RS10100 0.26 +0.2 722,792 + HMPREF1058_RS10100 0.26 +0.9 722,815 + HMPREF1058_RS10100 0.37 +0.1 722,849 + HMPREF1058_RS10100 0.53 -0.5
Or see this region's nucleotide sequence