Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS09870

Experiment: Lacto-N-tetraose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS09880 and HMPREF1058_RS09875 are separated by 201 nucleotidesHMPREF1058_RS09875 and HMPREF1058_RS09870 overlap by 4 nucleotidesHMPREF1058_RS09870 and HMPREF1058_RS09865 are separated by 19 nucleotidesHMPREF1058_RS09865 and HMPREF1058_RS09860 are separated by 2 nucleotidesHMPREF1058_RS09860 and HMPREF1058_RS09855 are separated by 2 nucleotides HMPREF1058_RS09880: HMPREF1058_RS09880 - DUF4134 domain-containing protein, at 768,234 to 768,545 _RS09880 HMPREF1058_RS09875: HMPREF1058_RS09875 - hypothetical protein, at 768,747 to 769,466 _RS09875 HMPREF1058_RS09870: HMPREF1058_RS09870 - DUF3408 domain-containing protein, at 769,463 to 769,705 _RS09870 HMPREF1058_RS09865: HMPREF1058_RS09865 - DUF3408 domain-containing protein, at 769,725 to 770,072 _RS09865 HMPREF1058_RS09860: HMPREF1058_RS09860 - DUF3408 domain-containing protein, at 770,075 to 770,515 _RS09860 HMPREF1058_RS09855: HMPREF1058_RS09855 - ParA family protein, at 770,518 to 771,567 _RS09855 Position (kb) 769 770Strain fitness (log2 ratio) -2 -1 0 1 2at 768.501 kb on - strand, within HMPREF1058_RS09880at 768.750 kb on + strandat 769.466 kb on + strandat 769.466 kb on + strandat 769.466 kb on + strandat 769.495 kb on + strand, within HMPREF1058_RS09870at 769.495 kb on + strand, within HMPREF1058_RS09870at 769.495 kb on + strand, within HMPREF1058_RS09870at 769.495 kb on + strand, within HMPREF1058_RS09870at 769.583 kb on + strand, within HMPREF1058_RS09870at 769.629 kb on + strand, within HMPREF1058_RS09870at 769.891 kb on + strand, within HMPREF1058_RS09865at 769.891 kb on + strand, within HMPREF1058_RS09865at 770.292 kb on + strand, within HMPREF1058_RS09860at 770.427 kb on + strand, within HMPREF1058_RS09860at 770.519 kb on + strandat 770.542 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C)
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768,501 - HMPREF1058_RS09880 0.86 -0.1
768,750 + -0.2
769,466 + +2.1
769,466 + +1.1
769,466 + +0.2
769,495 + HMPREF1058_RS09870 0.13 +0.2
769,495 + HMPREF1058_RS09870 0.13 +0.5
769,495 + HMPREF1058_RS09870 0.13 -2.2
769,495 + HMPREF1058_RS09870 0.13 +1.7
769,583 + HMPREF1058_RS09870 0.49 -0.1
769,629 + HMPREF1058_RS09870 0.68 +0.2
769,891 + HMPREF1058_RS09865 0.48 -0.7
769,891 + HMPREF1058_RS09865 0.48 -0.8
770,292 + HMPREF1058_RS09860 0.49 +1.8
770,427 + HMPREF1058_RS09860 0.80 -0.7
770,519 + +0.4
770,542 + -1.4

Or see this region's nucleotide sequence