Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09830 and HMPREF1058_RS09825 are separated by 301 nucleotides HMPREF1058_RS09825 and HMPREF1058_RS09820 are separated by 238 nucleotides HMPREF1058_RS09820 and HMPREF1058_RS09815 are separated by 279 nucleotides
HMPREF1058_RS09830: HMPREF1058_RS09830 - ATP-binding protein, at 779,094 to 780,224
_RS09830
HMPREF1058_RS09825: HMPREF1058_RS09825 - RteC domain-containing protein, at 780,526 to 781,131
_RS09825
HMPREF1058_RS09820: HMPREF1058_RS09820 - dihydrofolate reductase family protein, at 781,370 to 781,792
_RS09820
HMPREF1058_RS09815: HMPREF1058_RS09815 - sigma-54-dependent Fis family transcriptional regulator, at 782,072 to 783,394
_RS09815
Position (kb) 780
781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 779.556 kb on + strand, within HMPREF1058_RS09830 at 779.595 kb on + strand, within HMPREF1058_RS09830 at 779.689 kb on - strand, within HMPREF1058_RS09830 at 779.692 kb on + strand, within HMPREF1058_RS09830 at 779.693 kb on - strand, within HMPREF1058_RS09830 at 779.711 kb on - strand, within HMPREF1058_RS09830 at 779.711 kb on - strand, within HMPREF1058_RS09830 at 779.870 kb on + strand, within HMPREF1058_RS09830 at 779.913 kb on + strand, within HMPREF1058_RS09830 at 779.949 kb on - strand, within HMPREF1058_RS09830 at 780.010 kb on - strand, within HMPREF1058_RS09830 at 780.051 kb on + strand, within HMPREF1058_RS09830 at 780.052 kb on - strand, within HMPREF1058_RS09830 at 780.097 kb on + strand, within HMPREF1058_RS09830 at 780.098 kb on - strand, within HMPREF1058_RS09830 at 780.098 kb on - strand, within HMPREF1058_RS09830 at 780.209 kb on + strand at 780.210 kb on - strand at 780.225 kb on - strand at 780.357 kb on - strand at 780.358 kb on + strand at 780.438 kb on + strand at 780.441 kb on - strand at 780.441 kb on - strand at 780.492 kb on + strand at 780.508 kb on + strand at 780.508 kb on + strand at 780.509 kb on - strand at 780.676 kb on + strand, within HMPREF1058_RS09825 at 780.756 kb on + strand, within HMPREF1058_RS09825 at 780.756 kb on + strand, within HMPREF1058_RS09825 at 780.835 kb on + strand, within HMPREF1058_RS09825 at 780.940 kb on - strand, within HMPREF1058_RS09825 at 781.183 kb on + strand at 781.324 kb on + strand at 781.325 kb on - strand at 781.330 kb on - strand at 781.349 kb on + strand at 781.349 kb on + strand at 781.349 kb on + strand at 781.395 kb on + strand at 781.395 kb on + strand at 781.396 kb on - strand at 781.396 kb on - strand at 781.512 kb on + strand, within HMPREF1058_RS09820 at 781.512 kb on + strand, within HMPREF1058_RS09820 at 781.513 kb on - strand, within HMPREF1058_RS09820 at 781.513 kb on - strand, within HMPREF1058_RS09820 at 781.513 kb on - strand, within HMPREF1058_RS09820 at 781.513 kb on - strand, within HMPREF1058_RS09820 at 781.513 kb on - strand, within HMPREF1058_RS09820 at 781.518 kb on - strand, within HMPREF1058_RS09820 at 781.557 kb on - strand, within HMPREF1058_RS09820 at 781.558 kb on + strand, within HMPREF1058_RS09820 at 781.559 kb on - strand, within HMPREF1058_RS09820 at 781.663 kb on - strand, within HMPREF1058_RS09820 at 781.731 kb on + strand, within HMPREF1058_RS09820 at 781.731 kb on + strand, within HMPREF1058_RS09820 at 781.786 kb on + strand at 781.828 kb on - strand at 781.844 kb on + strand at 781.911 kb on + strand at 781.912 kb on - strand at 781.983 kb on + strand at 781.988 kb on + strand at 781.989 kb on - strand at 781.989 kb on - strand at 781.990 kb on + strand at 781.991 kb on - strand at 781.991 kb on - strand at 782.096 kb on - strand at 782.121 kb on + strand at 782.121 kb on + strand at 782.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 779,556 + HMPREF1058_RS09830 0.41 -0.5 779,595 + HMPREF1058_RS09830 0.44 -0.8 779,689 - HMPREF1058_RS09830 0.53 +0.2 779,692 + HMPREF1058_RS09830 0.53 -1.0 779,693 - HMPREF1058_RS09830 0.53 -3.4 779,711 - HMPREF1058_RS09830 0.55 -1.1 779,711 - HMPREF1058_RS09830 0.55 -0.2 779,870 + HMPREF1058_RS09830 0.69 +0.1 779,913 + HMPREF1058_RS09830 0.72 -1.4 779,949 - HMPREF1058_RS09830 0.76 -0.8 780,010 - HMPREF1058_RS09830 0.81 +0.8 780,051 + HMPREF1058_RS09830 0.85 -0.6 780,052 - HMPREF1058_RS09830 0.85 -1.1 780,097 + HMPREF1058_RS09830 0.89 -0.1 780,098 - HMPREF1058_RS09830 0.89 +0.8 780,098 - HMPREF1058_RS09830 0.89 -0.4 780,209 + -0.8 780,210 - +2.3 780,225 - -2.0 780,357 - -1.8 780,358 + -0.1 780,438 + -0.4 780,441 - -0.1 780,441 - +0.6 780,492 + -0.3 780,508 + +2.0 780,508 + +0.6 780,509 - +0.0 780,676 + HMPREF1058_RS09825 0.25 -0.3 780,756 + HMPREF1058_RS09825 0.38 -1.8 780,756 + HMPREF1058_RS09825 0.38 -1.4 780,835 + HMPREF1058_RS09825 0.51 -0.8 780,940 - HMPREF1058_RS09825 0.68 -1.4 781,183 + -0.9 781,324 + -0.5 781,325 - -1.1 781,330 - -1.6 781,349 + -1.3 781,349 + -2.4 781,349 + -2.0 781,395 + +0.5 781,395 + -1.9 781,396 - -0.8 781,396 - -2.2 781,512 + HMPREF1058_RS09820 0.34 -1.5 781,512 + HMPREF1058_RS09820 0.34 +0.4 781,513 - HMPREF1058_RS09820 0.34 -1.4 781,513 - HMPREF1058_RS09820 0.34 +1.2 781,513 - HMPREF1058_RS09820 0.34 -0.6 781,513 - HMPREF1058_RS09820 0.34 +0.1 781,513 - HMPREF1058_RS09820 0.34 +0.4 781,518 - HMPREF1058_RS09820 0.35 -2.2 781,557 - HMPREF1058_RS09820 0.44 -1.2 781,558 + HMPREF1058_RS09820 0.44 -0.1 781,559 - HMPREF1058_RS09820 0.45 +0.0 781,663 - HMPREF1058_RS09820 0.69 +2.2 781,731 + HMPREF1058_RS09820 0.85 -1.8 781,731 + HMPREF1058_RS09820 0.85 -0.3 781,786 + -0.2 781,828 - -0.7 781,844 + +0.1 781,911 + -0.0 781,912 - +1.3 781,983 + -0.8 781,988 + -0.1 781,989 - -1.8 781,989 - +0.9 781,990 + +1.2 781,991 - +0.3 781,991 - +0.5 782,096 - -0.5 782,121 + +0.5 782,121 + -1.0 782,121 + -0.8
Or see this region's nucleotide sequence