Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09455 and HMPREF1058_RS09450 are separated by 168 nucleotides HMPREF1058_RS09450 and HMPREF1058_RS09445 are separated by 77 nucleotides HMPREF1058_RS09445 and HMPREF1058_RS09440 are separated by 14 nucleotides HMPREF1058_RS09440 and HMPREF1058_RS09435 are separated by 98 nucleotides HMPREF1058_RS09435 and HMPREF1058_RS09430 are separated by 43 nucleotides HMPREF1058_RS09430 and HMPREF1058_RS09425 are separated by 33 nucleotides HMPREF1058_RS09425 and HMPREF1058_RS09420 are separated by 12 nucleotides HMPREF1058_RS09420 and HMPREF1058_RS09415 are separated by 51 nucleotides
HMPREF1058_RS09455: HMPREF1058_RS09455 - aminopeptidase P family protein, at 879,749 to 881,530
_RS09455
HMPREF1058_RS09450: HMPREF1058_RS09450 - 30S ribosomal protein S21, at 881,699 to 881,890
_RS09450
HMPREF1058_RS09445: HMPREF1058_RS09445 - tyrosine-type recombinase/integrase, at 881,968 to 882,849
_RS09445
HMPREF1058_RS09440: HMPREF1058_RS09440 - ribosome-associated translation inhibitor RaiA, at 882,864 to 883,163
_RS09440
HMPREF1058_RS09435: HMPREF1058_RS09435 - tRNA-Thr, at 883,262 to 883,335
_RS09435
HMPREF1058_RS09430: HMPREF1058_RS09430 - tRNA-Tyr, at 883,379 to 883,461
_RS09430
HMPREF1058_RS09425: HMPREF1058_RS09425 - tRNA-Gly, at 883,495 to 883,567
_RS09425
HMPREF1058_RS09420: HMPREF1058_RS09420 - tRNA-Thr, at 883,580 to 883,651
_RS09420
HMPREF1058_RS09415: HMPREF1058_RS09415 - elongation factor Tu, at 883,703 to 884,887
_RS09415
Position (kb) 881
882
883 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 881.045 kb on + strand, within HMPREF1058_RS09455 at 881.046 kb on - strand, within HMPREF1058_RS09455 at 881.088 kb on - strand, within HMPREF1058_RS09455 at 881.118 kb on - strand, within HMPREF1058_RS09455 at 881.216 kb on + strand, within HMPREF1058_RS09455 at 881.276 kb on - strand, within HMPREF1058_RS09455 at 881.279 kb on - strand, within HMPREF1058_RS09455 at 881.292 kb on - strand, within HMPREF1058_RS09455 at 881.365 kb on + strand at 881.424 kb on + strand at 881.424 kb on + strand at 881.425 kb on - strand at 881.425 kb on - strand at 881.425 kb on - strand at 881.500 kb on + strand at 881.505 kb on - strand at 881.509 kb on + strand at 881.516 kb on - strand at 881.542 kb on + strand at 881.543 kb on - strand at 881.554 kb on + strand at 881.580 kb on - strand at 881.597 kb on + strand at 881.628 kb on + strand at 881.672 kb on + strand at 882.029 kb on + strand at 882.033 kb on + strand at 882.388 kb on + strand, within HMPREF1058_RS09445 at 882.388 kb on + strand, within HMPREF1058_RS09445 at 882.859 kb on + strand at 882.863 kb on + strand at 882.951 kb on + strand, within HMPREF1058_RS09440 at 882.964 kb on + strand, within HMPREF1058_RS09440 at 882.964 kb on + strand, within HMPREF1058_RS09440 at 883.079 kb on + strand, within HMPREF1058_RS09440 at 883.080 kb on - strand, within HMPREF1058_RS09440 at 883.102 kb on + strand, within HMPREF1058_RS09440 at 883.103 kb on - strand, within HMPREF1058_RS09440
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 881,045 + HMPREF1058_RS09455 0.73 -0.5 881,046 - HMPREF1058_RS09455 0.73 -2.0 881,088 - HMPREF1058_RS09455 0.75 -0.8 881,118 - HMPREF1058_RS09455 0.77 -1.3 881,216 + HMPREF1058_RS09455 0.82 -0.9 881,276 - HMPREF1058_RS09455 0.86 -0.1 881,279 - HMPREF1058_RS09455 0.86 +0.1 881,292 - HMPREF1058_RS09455 0.87 -0.2 881,365 + -1.3 881,424 + +1.9 881,424 + +1.8 881,425 - -0.8 881,425 - -1.6 881,425 - -2.8 881,500 + -1.3 881,505 - -1.1 881,509 + -0.1 881,516 - +0.3 881,542 + +1.3 881,543 - -0.4 881,554 + -0.1 881,580 - +1.3 881,597 + -0.7 881,628 + -1.0 881,672 + +0.3 882,029 + +2.1 882,033 + +1.0 882,388 + HMPREF1058_RS09445 0.48 -0.7 882,388 + HMPREF1058_RS09445 0.48 -1.0 882,859 + -0.6 882,863 + +0.8 882,951 + HMPREF1058_RS09440 0.29 +2.4 882,964 + HMPREF1058_RS09440 0.33 +2.9 882,964 + HMPREF1058_RS09440 0.33 -0.1 883,079 + HMPREF1058_RS09440 0.72 +0.7 883,080 - HMPREF1058_RS09440 0.72 +1.0 883,102 + HMPREF1058_RS09440 0.79 -0.8 883,103 - HMPREF1058_RS09440 0.80 +0.7
Or see this region's nucleotide sequence