Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09245 and HMPREF1058_RS09240 are separated by 10 nucleotides HMPREF1058_RS09240 and HMPREF1058_RS09235 are separated by 1 nucleotides HMPREF1058_RS09235 and HMPREF1058_RS20770 are separated by 14 nucleotides HMPREF1058_RS20770 and HMPREF1058_RS09230 are separated by 33 nucleotides HMPREF1058_RS09230 and HMPREF1058_RS09225 are separated by 11 nucleotides
HMPREF1058_RS09245: HMPREF1058_RS09245 - preprotein translocase subunit SecY, at 909,486 to 910,832
_RS09245
HMPREF1058_RS09240: HMPREF1058_RS09240 - type I methionyl aminopeptidase, at 910,843 to 911,640
_RS09240
HMPREF1058_RS09235: HMPREF1058_RS09235 - translation initiation factor IF-1, at 911,642 to 911,860
_RS09235
HMPREF1058_RS20770: HMPREF1058_RS20770 - 50S ribosomal protein L36, at 911,875 to 911,991
_RS20770
HMPREF1058_RS09230: HMPREF1058_RS09230 - 30S ribosomal protein S13, at 912,025 to 912,405
_RS09230
HMPREF1058_RS09225: HMPREF1058_RS09225 - 30S ribosomal protein S11, at 912,417 to 912,806
_RS09225
Position (kb) 910
911
912 Strain fitness (log2 ratio) -2
-1
0
1
2 at 910.871 kb on + strand at 910.895 kb on + strand at 910.895 kb on + strand at 910.895 kb on + strand at 910.926 kb on + strand, within HMPREF1058_RS09240 at 910.983 kb on + strand, within HMPREF1058_RS09240 at 910.983 kb on + strand, within HMPREF1058_RS09240 at 910.992 kb on + strand, within HMPREF1058_RS09240 at 911.061 kb on + strand, within HMPREF1058_RS09240 at 911.084 kb on + strand, within HMPREF1058_RS09240 at 911.149 kb on + strand, within HMPREF1058_RS09240 at 911.246 kb on + strand, within HMPREF1058_RS09240 at 911.248 kb on + strand, within HMPREF1058_RS09240 at 911.252 kb on + strand, within HMPREF1058_RS09240 at 911.252 kb on + strand, within HMPREF1058_RS09240 at 911.294 kb on + strand, within HMPREF1058_RS09240 at 911.294 kb on + strand, within HMPREF1058_RS09240 at 911.294 kb on + strand, within HMPREF1058_RS09240 at 911.294 kb on + strand, within HMPREF1058_RS09240 at 911.376 kb on + strand, within HMPREF1058_RS09240 at 911.376 kb on + strand, within HMPREF1058_RS09240 at 911.376 kb on + strand, within HMPREF1058_RS09240 at 911.489 kb on + strand, within HMPREF1058_RS09240 at 911.489 kb on + strand, within HMPREF1058_RS09240 at 911.492 kb on + strand, within HMPREF1058_RS09240 at 911.520 kb on + strand, within HMPREF1058_RS09240 at 911.586 kb on + strand at 911.605 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 910,871 + +2.0 910,895 + +0.3 910,895 + +1.9 910,895 + +0.9 910,926 + HMPREF1058_RS09240 0.10 -1.2 910,983 + HMPREF1058_RS09240 0.18 -1.7 910,983 + HMPREF1058_RS09240 0.18 -0.3 910,992 + HMPREF1058_RS09240 0.19 -0.0 911,061 + HMPREF1058_RS09240 0.27 -0.2 911,084 + HMPREF1058_RS09240 0.30 +0.2 911,149 + HMPREF1058_RS09240 0.38 -0.9 911,246 + HMPREF1058_RS09240 0.51 -1.2 911,248 + HMPREF1058_RS09240 0.51 -1.0 911,252 + HMPREF1058_RS09240 0.51 -2.6 911,252 + HMPREF1058_RS09240 0.51 -2.6 911,294 + HMPREF1058_RS09240 0.57 +0.6 911,294 + HMPREF1058_RS09240 0.57 -0.7 911,294 + HMPREF1058_RS09240 0.57 +0.2 911,294 + HMPREF1058_RS09240 0.57 -1.3 911,376 + HMPREF1058_RS09240 0.67 -1.6 911,376 + HMPREF1058_RS09240 0.67 -2.2 911,376 + HMPREF1058_RS09240 0.67 -0.7 911,489 + HMPREF1058_RS09240 0.81 -2.2 911,489 + HMPREF1058_RS09240 0.81 -1.6 911,492 + HMPREF1058_RS09240 0.81 -1.8 911,520 + HMPREF1058_RS09240 0.85 -0.3 911,586 + -2.5 911,605 + +0.4
Or see this region's nucleotide sequence