Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08855 and HMPREF1058_RS08850 are separated by 22 nucleotides HMPREF1058_RS08850 and HMPREF1058_RS08845 are separated by 107 nucleotides HMPREF1058_RS08845 and HMPREF1058_RS08840 are separated by 5 nucleotides HMPREF1058_RS08840 and HMPREF1058_RS08835 are separated by 13 nucleotides
HMPREF1058_RS08855: HMPREF1058_RS08855 - arginine repressor, at 1,014,132 to 1,014,608
_RS08855
HMPREF1058_RS08850: HMPREF1058_RS08850 - N-acetyltransferase, at 1,014,631 to 1,015,188
_RS08850
HMPREF1058_RS08845: HMPREF1058_RS08845 - argininosuccinate synthase, at 1,015,296 to 1,016,504
_RS08845
HMPREF1058_RS08840: HMPREF1058_RS08840 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,016,510 to 1,017,478
_RS08840
HMPREF1058_RS08835: HMPREF1058_RS08835 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 1,017,492 to 1,018,616
_RS08835
Position (kb) 1015
1016
1017 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 1014.317 kb on - strand, within HMPREF1058_RS08855 at 1014.318 kb on + strand, within HMPREF1058_RS08855 at 1014.318 kb on + strand, within HMPREF1058_RS08855 at 1014.318 kb on + strand, within HMPREF1058_RS08855 at 1014.319 kb on - strand, within HMPREF1058_RS08855 at 1014.323 kb on - strand, within HMPREF1058_RS08855 at 1014.323 kb on - strand, within HMPREF1058_RS08855 at 1014.335 kb on + strand, within HMPREF1058_RS08855 at 1014.336 kb on - strand at 1014.343 kb on - strand, within HMPREF1058_RS08855 at 1014.343 kb on - strand, within HMPREF1058_RS08855 at 1014.343 kb on - strand, within HMPREF1058_RS08855 at 1014.431 kb on - strand, within HMPREF1058_RS08855 at 1014.468 kb on + strand, within HMPREF1058_RS08855 at 1014.510 kb on - strand, within HMPREF1058_RS08855 at 1014.510 kb on - strand, within HMPREF1058_RS08855 at 1014.527 kb on + strand, within HMPREF1058_RS08855 at 1014.528 kb on - strand, within HMPREF1058_RS08855 at 1014.528 kb on - strand, within HMPREF1058_RS08855 at 1014.593 kb on - strand at 1014.602 kb on - strand at 1014.606 kb on + strand at 1014.612 kb on - strand at 1014.616 kb on + strand at 1014.616 kb on + strand at 1014.617 kb on - strand at 1014.702 kb on + strand, within HMPREF1058_RS08850 at 1014.703 kb on - strand, within HMPREF1058_RS08850 at 1014.761 kb on - strand, within HMPREF1058_RS08850 at 1014.835 kb on - strand, within HMPREF1058_RS08850 at 1014.859 kb on + strand, within HMPREF1058_RS08850 at 1014.860 kb on - strand, within HMPREF1058_RS08850 at 1014.860 kb on - strand, within HMPREF1058_RS08850 at 1014.860 kb on - strand, within HMPREF1058_RS08850 at 1014.860 kb on - strand, within HMPREF1058_RS08850 at 1014.860 kb on - strand, within HMPREF1058_RS08850 at 1014.863 kb on + strand, within HMPREF1058_RS08850 at 1014.922 kb on - strand, within HMPREF1058_RS08850 at 1014.974 kb on + strand, within HMPREF1058_RS08850 at 1015.125 kb on + strand, within HMPREF1058_RS08850 at 1015.141 kb on - strand at 1015.187 kb on - strand at 1015.245 kb on + strand at 1015.249 kb on + strand at 1015.318 kb on + strand at 1015.318 kb on + strand at 1015.318 kb on + strand at 1015.321 kb on + strand at 1015.322 kb on - strand at 1015.360 kb on + strand at 1015.361 kb on - strand at 1015.395 kb on + strand at 1015.396 kb on - strand at 1015.509 kb on + strand, within HMPREF1058_RS08845 at 1015.509 kb on + strand, within HMPREF1058_RS08845 at 1015.509 kb on + strand, within HMPREF1058_RS08845 at 1015.510 kb on - strand, within HMPREF1058_RS08845 at 1015.530 kb on + strand, within HMPREF1058_RS08845 at 1015.530 kb on + strand, within HMPREF1058_RS08845 at 1015.531 kb on - strand, within HMPREF1058_RS08845 at 1015.531 kb on - strand, within HMPREF1058_RS08845 at 1015.532 kb on + strand, within HMPREF1058_RS08845 at 1015.562 kb on + strand, within HMPREF1058_RS08845 at 1015.566 kb on + strand, within HMPREF1058_RS08845 at 1015.571 kb on + strand, within HMPREF1058_RS08845 at 1015.571 kb on + strand, within HMPREF1058_RS08845 at 1015.621 kb on - strand, within HMPREF1058_RS08845 at 1015.757 kb on - strand, within HMPREF1058_RS08845 at 1015.856 kb on + strand, within HMPREF1058_RS08845 at 1015.856 kb on + strand, within HMPREF1058_RS08845 at 1015.952 kb on + strand, within HMPREF1058_RS08845 at 1015.952 kb on + strand, within HMPREF1058_RS08845 at 1016.007 kb on - strand, within HMPREF1058_RS08845 at 1016.007 kb on - strand, within HMPREF1058_RS08845 at 1016.126 kb on + strand, within HMPREF1058_RS08845 at 1016.312 kb on + strand, within HMPREF1058_RS08845 at 1016.394 kb on + strand at 1016.456 kb on + strand at 1016.472 kb on + strand at 1016.475 kb on + strand at 1016.478 kb on - strand at 1016.478 kb on - strand at 1016.545 kb on + strand at 1016.575 kb on + strand at 1016.629 kb on + strand, within HMPREF1058_RS08840 at 1016.643 kb on + strand, within HMPREF1058_RS08840 at 1016.644 kb on - strand, within HMPREF1058_RS08840 at 1016.658 kb on - strand, within HMPREF1058_RS08840 at 1016.712 kb on + strand, within HMPREF1058_RS08840 at 1016.713 kb on - strand, within HMPREF1058_RS08840 at 1016.753 kb on - strand, within HMPREF1058_RS08840 at 1016.790 kb on + strand, within HMPREF1058_RS08840 at 1016.841 kb on - strand, within HMPREF1058_RS08840 at 1016.878 kb on + strand, within HMPREF1058_RS08840 at 1016.918 kb on - strand, within HMPREF1058_RS08840 at 1016.970 kb on + strand, within HMPREF1058_RS08840 at 1017.043 kb on + strand, within HMPREF1058_RS08840 at 1017.065 kb on - strand, within HMPREF1058_RS08840 at 1017.179 kb on - strand, within HMPREF1058_RS08840 at 1017.236 kb on + strand, within HMPREF1058_RS08840 at 1017.246 kb on - strand, within HMPREF1058_RS08840 at 1017.249 kb on - strand, within HMPREF1058_RS08840 at 1017.249 kb on - strand, within HMPREF1058_RS08840 at 1017.361 kb on + strand, within HMPREF1058_RS08840 at 1017.415 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 1,014,317 - HMPREF1058_RS08855 0.39 -3.5 1,014,318 + HMPREF1058_RS08855 0.39 +0.6 1,014,318 + HMPREF1058_RS08855 0.39 -0.4 1,014,318 + HMPREF1058_RS08855 0.39 -1.6 1,014,319 - HMPREF1058_RS08855 0.39 -1.0 1,014,323 - HMPREF1058_RS08855 0.40 -3.4 1,014,323 - HMPREF1058_RS08855 0.40 -4.0 1,014,335 + HMPREF1058_RS08855 0.43 -0.5 1,014,336 - +1.6 1,014,343 - HMPREF1058_RS08855 0.44 -4.8 1,014,343 - HMPREF1058_RS08855 0.44 -2.3 1,014,343 - HMPREF1058_RS08855 0.44 +0.6 1,014,431 - HMPREF1058_RS08855 0.63 -2.1 1,014,468 + HMPREF1058_RS08855 0.70 +0.4 1,014,510 - HMPREF1058_RS08855 0.79 -3.6 1,014,510 - HMPREF1058_RS08855 0.79 -2.3 1,014,527 + HMPREF1058_RS08855 0.83 +1.1 1,014,528 - HMPREF1058_RS08855 0.83 -3.7 1,014,528 - HMPREF1058_RS08855 0.83 -2.2 1,014,593 - -2.8 1,014,602 - -0.9 1,014,606 + -1.2 1,014,612 - -3.2 1,014,616 + +0.3 1,014,616 + -0.3 1,014,617 - +1.4 1,014,702 + HMPREF1058_RS08850 0.13 -2.3 1,014,703 - HMPREF1058_RS08850 0.13 -2.1 1,014,761 - HMPREF1058_RS08850 0.23 -3.8 1,014,835 - HMPREF1058_RS08850 0.37 -2.9 1,014,859 + HMPREF1058_RS08850 0.41 -0.1 1,014,860 - HMPREF1058_RS08850 0.41 +1.3 1,014,860 - HMPREF1058_RS08850 0.41 +0.3 1,014,860 - HMPREF1058_RS08850 0.41 -0.9 1,014,860 - HMPREF1058_RS08850 0.41 -1.8 1,014,860 - HMPREF1058_RS08850 0.41 -2.6 1,014,863 + HMPREF1058_RS08850 0.42 -2.3 1,014,922 - HMPREF1058_RS08850 0.52 -1.0 1,014,974 + HMPREF1058_RS08850 0.61 -1.9 1,015,125 + HMPREF1058_RS08850 0.89 +0.5 1,015,141 - -2.6 1,015,187 - +4.4 1,015,245 + +0.1 1,015,249 + -2.1 1,015,318 + -5.0 1,015,318 + -0.4 1,015,318 + -1.3 1,015,321 + -3.2 1,015,322 - -1.5 1,015,360 + -2.9 1,015,361 - -3.0 1,015,395 + -4.2 1,015,396 - -4.2 1,015,509 + HMPREF1058_RS08845 0.18 +0.2 1,015,509 + HMPREF1058_RS08845 0.18 -3.9 1,015,509 + HMPREF1058_RS08845 0.18 -1.2 1,015,510 - HMPREF1058_RS08845 0.18 -2.0 1,015,530 + HMPREF1058_RS08845 0.19 -2.3 1,015,530 + HMPREF1058_RS08845 0.19 -3.1 1,015,531 - HMPREF1058_RS08845 0.19 -0.7 1,015,531 - HMPREF1058_RS08845 0.19 +0.6 1,015,532 + HMPREF1058_RS08845 0.20 -2.5 1,015,562 + HMPREF1058_RS08845 0.22 -2.1 1,015,566 + HMPREF1058_RS08845 0.22 -2.1 1,015,571 + HMPREF1058_RS08845 0.23 -1.0 1,015,571 + HMPREF1058_RS08845 0.23 -3.0 1,015,621 - HMPREF1058_RS08845 0.27 +0.8 1,015,757 - HMPREF1058_RS08845 0.38 +1.1 1,015,856 + HMPREF1058_RS08845 0.46 -4.7 1,015,856 + HMPREF1058_RS08845 0.46 -2.1 1,015,952 + HMPREF1058_RS08845 0.54 -2.0 1,015,952 + HMPREF1058_RS08845 0.54 -1.2 1,016,007 - HMPREF1058_RS08845 0.59 +0.4 1,016,007 - HMPREF1058_RS08845 0.59 -0.2 1,016,126 + HMPREF1058_RS08845 0.69 -2.7 1,016,312 + HMPREF1058_RS08845 0.84 -3.9 1,016,394 + +0.1 1,016,456 + -0.0 1,016,472 + -4.7 1,016,475 + -0.3 1,016,478 - +1.6 1,016,478 - -3.3 1,016,545 + -2.5 1,016,575 + -4.6 1,016,629 + HMPREF1058_RS08840 0.12 -3.5 1,016,643 + HMPREF1058_RS08840 0.14 -2.9 1,016,644 - HMPREF1058_RS08840 0.14 +2.0 1,016,658 - HMPREF1058_RS08840 0.15 -2.6 1,016,712 + HMPREF1058_RS08840 0.21 -2.4 1,016,713 - HMPREF1058_RS08840 0.21 -1.5 1,016,753 - HMPREF1058_RS08840 0.25 -0.1 1,016,790 + HMPREF1058_RS08840 0.29 -1.5 1,016,841 - HMPREF1058_RS08840 0.34 -1.9 1,016,878 + HMPREF1058_RS08840 0.38 -2.7 1,016,918 - HMPREF1058_RS08840 0.42 -2.5 1,016,970 + HMPREF1058_RS08840 0.47 -3.3 1,017,043 + HMPREF1058_RS08840 0.55 -3.7 1,017,065 - HMPREF1058_RS08840 0.57 -1.9 1,017,179 - HMPREF1058_RS08840 0.69 -1.2 1,017,236 + HMPREF1058_RS08840 0.75 -2.0 1,017,246 - HMPREF1058_RS08840 0.76 -2.5 1,017,249 - HMPREF1058_RS08840 0.76 -2.0 1,017,249 - HMPREF1058_RS08840 0.76 -0.9 1,017,361 + HMPREF1058_RS08840 0.88 -2.3 1,017,415 + -4.1
Or see this region's nucleotide sequence