Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08840

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,015,510	-		HMPREF1058_RS08845	0.18	-2.0
1,015,530	+		HMPREF1058_RS08845	0.19	-2.3
1,015,530	+		HMPREF1058_RS08845	0.19	-3.1
1,015,531	-		HMPREF1058_RS08845	0.19	-0.7
1,015,531	-		HMPREF1058_RS08845	0.19	+0.6
1,015,532	+		HMPREF1058_RS08845	0.20	-2.5
1,015,562	+		HMPREF1058_RS08845	0.22	-2.1
1,015,566	+		HMPREF1058_RS08845	0.22	-2.1
1,015,571	+		HMPREF1058_RS08845	0.23	-1.0
1,015,571	+		HMPREF1058_RS08845	0.23	-3.0
1,015,621	-		HMPREF1058_RS08845	0.27	+0.8
1,015,757	-		HMPREF1058_RS08845	0.38	+1.1
1,015,856	+		HMPREF1058_RS08845	0.46	-4.7
1,015,856	+		HMPREF1058_RS08845	0.46	-2.1
1,015,952	+		HMPREF1058_RS08845	0.54	-2.0
1,015,952	+		HMPREF1058_RS08845	0.54	-1.2
1,016,007	-		HMPREF1058_RS08845	0.59	+0.4
1,016,007	-		HMPREF1058_RS08845	0.59	-0.2
1,016,126	+		HMPREF1058_RS08845	0.69	-2.7
1,016,312	+		HMPREF1058_RS08845	0.84	-3.9
1,016,394	+				+0.1
1,016,456	+				-0.0
1,016,472	+				-4.7
1,016,475	+				-0.3
1,016,478	-				+1.6
1,016,478	-				-3.3
1,016,545	+				-2.5
1,016,575	+				-4.6
1,016,629	+		HMPREF1058_RS08840	0.12	-3.5
1,016,643	+		HMPREF1058_RS08840	0.14	-2.9
1,016,644	-		HMPREF1058_RS08840	0.14	+2.0
1,016,658	-		HMPREF1058_RS08840	0.15	-2.6
1,016,712	+		HMPREF1058_RS08840	0.21	-2.4
1,016,713	-		HMPREF1058_RS08840	0.21	-1.5
1,016,753	-		HMPREF1058_RS08840	0.25	-0.1
1,016,790	+		HMPREF1058_RS08840	0.29	-1.5
1,016,841	-		HMPREF1058_RS08840	0.34	-1.9
1,016,878	+		HMPREF1058_RS08840	0.38	-2.7
1,016,918	-		HMPREF1058_RS08840	0.42	-2.5
1,016,970	+		HMPREF1058_RS08840	0.47	-3.3
1,017,043	+		HMPREF1058_RS08840	0.55	-3.7
1,017,065	-		HMPREF1058_RS08840	0.57	-1.9
1,017,179	-		HMPREF1058_RS08840	0.69	-1.2
1,017,236	+		HMPREF1058_RS08840	0.75	-2.0
1,017,246	-		HMPREF1058_RS08840	0.76	-2.5
1,017,249	-		HMPREF1058_RS08840	0.76	-2.0
1,017,249	-		HMPREF1058_RS08840	0.76	-0.9
1,017,361	+		HMPREF1058_RS08840	0.88	-2.3
1,017,415	+				-4.1
1,017,508	+				-2.8
1,017,508	+				-4.6
1,017,508	+				-2.4
1,017,591	+				-3.5
1,017,637	-		HMPREF1058_RS08835	0.13	-1.8
1,017,637	-		HMPREF1058_RS08835	0.13	-0.4
1,017,704	-		HMPREF1058_RS08835	0.19	-1.0
1,017,704	-		HMPREF1058_RS08835	0.19	+0.8
1,017,909	-		HMPREF1058_RS08835	0.37	-0.9
1,017,942	+		HMPREF1058_RS08835	0.40	-2.7
1,017,942	+		HMPREF1058_RS08835	0.40	-1.8
1,017,943	-		HMPREF1058_RS08835	0.40	-2.2
1,017,961	+		HMPREF1058_RS08835	0.42	-0.8
1,017,961	+		HMPREF1058_RS08835	0.42	-2.4
1,017,962	-		HMPREF1058_RS08835	0.42	+0.2
1,018,121	-		HMPREF1058_RS08835	0.56	+0.0
1,018,264	-		HMPREF1058_RS08835	0.69	-0.8