Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08830

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,017,909	-		HMPREF1058_RS08835	0.37	-0.9
1,017,942	+		HMPREF1058_RS08835	0.40	-2.7
1,017,942	+		HMPREF1058_RS08835	0.40	-1.8
1,017,943	-		HMPREF1058_RS08835	0.40	-2.2
1,017,961	+		HMPREF1058_RS08835	0.42	-0.8
1,017,961	+		HMPREF1058_RS08835	0.42	-2.4
1,017,962	-		HMPREF1058_RS08835	0.42	+0.2
1,018,121	-		HMPREF1058_RS08835	0.56	+0.0
1,018,264	-		HMPREF1058_RS08835	0.69	-0.8
1,018,565	+				+0.5
1,018,612	+				+2.8
1,018,740	+				-0.8
1,018,743	+				-0.8
1,018,774	+				-0.0
1,018,778	+				+1.6
1,018,780	+				-0.0
1,018,781	-				-2.5
1,018,781	-				-1.4
1,018,796	+				+0.0
1,018,800	-				-0.1
1,018,807	+				-0.5
1,018,869	-				-2.8
1,019,076	-		HMPREF1058_RS08830	0.36	-2.8
1,019,117	-		HMPREF1058_RS08830	0.41	-1.9
1,019,135	-		HMPREF1058_RS08830	0.43	-3.6
1,019,249	-		HMPREF1058_RS08830	0.58	-1.4
1,019,265	-		HMPREF1058_RS08830	0.60	-3.8
1,019,332	-		HMPREF1058_RS08830	0.69	-0.0
1,019,345	+		HMPREF1058_RS08830	0.70	-1.2
1,019,346	-		HMPREF1058_RS08830	0.71	-1.8
1,019,445	-		HMPREF1058_RS08830	0.83	-0.2
1,019,464	+		HMPREF1058_RS08830	0.86	-5.4
1,019,464	+		HMPREF1058_RS08830	0.86	-1.5
1,019,489	+		HMPREF1058_RS08830	0.89	-2.7
1,019,651	+				-0.3
1,019,723	+				+0.3
1,019,725	+				+0.9
1,019,739	+				-0.7
1,019,739	+				-1.5
1,019,740	-				-1.3
1,019,813	-				-0.7
1,019,853	+		HMPREF1058_RS08825	0.11	-2.6
1,019,854	-		HMPREF1058_RS08825	0.11	-0.8
1,019,854	-		HMPREF1058_RS08825	0.11	-0.3
1,019,857	+		HMPREF1058_RS08825	0.11	-1.4
1,019,858	-		HMPREF1058_RS08825	0.11	-0.8
1,019,860	-		HMPREF1058_RS08825	0.12	-1.8
1,019,882	+		HMPREF1058_RS08825	0.14	+1.0
1,019,882	+		HMPREF1058_RS08825	0.14	-0.1
1,019,883	-		HMPREF1058_RS08825	0.14	-0.2
1,019,884	+		HMPREF1058_RS08825	0.14	+1.4
1,019,885	-		HMPREF1058_RS08825	0.14	-0.6
1,019,937	+		HMPREF1058_RS08825	0.20	-2.8
1,019,938	-		HMPREF1058_RS08825	0.20	+0.7
1,019,997	-		HMPREF1058_RS08825	0.27	+4.4
1,019,998	+		HMPREF1058_RS08825	0.27	-0.1
1,020,201	-		HMPREF1058_RS08825	0.50	+0.1
1,020,210	+		HMPREF1058_RS08825	0.51	-0.2
1,020,286	+		HMPREF1058_RS08825	0.59	-0.6
1,020,308	-		HMPREF1058_RS08825	0.62	-1.7
1,020,397	+		HMPREF1058_RS08825	0.72	-2.2
1,020,398	-		HMPREF1058_RS08825	0.72	-0.9
1,020,398	-		HMPREF1058_RS08825	0.72	+0.3
1,020,436	+		HMPREF1058_RS08825	0.76	-1.4
1,020,436	+		HMPREF1058_RS08825	0.76	-0.4
1,020,437	-		HMPREF1058_RS08825	0.76	+0.1
1,020,571	+				+0.3
1,020,572	-				-0.0