Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08640

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,084,022	+		HMPREF1058_RS08645	0.25	-1.3
1,084,069	-		HMPREF1058_RS08645	0.29	-3.6
1,084,069	-		HMPREF1058_RS08645	0.29	-3.4
1,084,119	+		HMPREF1058_RS08645	0.33	-3.4
1,084,119	+		HMPREF1058_RS08645	0.33	-2.5
1,084,120	-		HMPREF1058_RS08645	0.33	-2.3
1,084,120	-		HMPREF1058_RS08645	0.33	-1.7
1,084,183	-		HMPREF1058_RS08645	0.38	-3.1
1,084,316	+		HMPREF1058_RS08645	0.49	-4.1
1,084,316	+		HMPREF1058_RS08645	0.49	-1.7
1,084,316	+		HMPREF1058_RS08645	0.49	+0.7
1,084,322	-		HMPREF1058_RS08645	0.49	-1.6
1,084,481	+		HMPREF1058_RS08645	0.62	-1.4
1,084,482	-		HMPREF1058_RS08645	0.62	-1.6
1,084,550	-		HMPREF1058_RS08645	0.68	-2.0
1,084,569	+		HMPREF1058_RS08645	0.69	-1.6
1,084,570	-		HMPREF1058_RS08645	0.69	+1.1
1,084,574	-		HMPREF1058_RS08645	0.69	-1.1
1,084,617	+		HMPREF1058_RS08645	0.73	+0.8
1,084,709	-		HMPREF1058_RS08645	0.80	-0.9
1,084,723	-		HMPREF1058_RS08645	0.81	-1.7
1,084,723	-		HMPREF1058_RS08645	0.81	-2.1
1,084,731	+		HMPREF1058_RS08645	0.82	+0.3
1,084,732	-		HMPREF1058_RS08645	0.82	-1.2
1,084,732	-		HMPREF1058_RS08645	0.82	+0.5
1,084,767	+		HMPREF1058_RS08645	0.85	-1.6
1,084,768	-		HMPREF1058_RS08645	0.85	-2.3
1,084,854	-				-0.7
1,084,915	+				-1.7
1,084,915	+				-1.5
1,084,916	-				-2.6
1,084,916	-				-3.8
1,084,946	+				-1.3
1,084,960	+				-0.7
1,084,962	+				+0.0
1,084,963	-				-2.4
1,084,995	+				-3.7
1,084,996	-				-2.2
1,084,996	-				-2.8
1,085,059	+				-0.5
1,085,060	-				+0.1
1,085,060	-				-4.5
1,085,064	-				+0.6
1,085,264	-		HMPREF1058_RS08640	0.30	-3.6
1,085,671	+		HMPREF1058_RS08640	0.72	-1.7
1,085,858	-				-4.1
1,086,134	-				-1.3
1,086,134	-				-0.0
1,086,137	+				+0.3
1,086,138	-				-1.8
1,086,138	-				-1.5
1,086,138	-				+1.0
1,086,138	-				-0.8
1,086,226	+				+1.3
1,086,244	-				-0.3
1,086,304	-				+0.3
1,086,390	-		HMPREF1058_RS08635	0.15	-1.9
1,086,561	-		HMPREF1058_RS08635	0.58	-1.7
1,086,577	+		HMPREF1058_RS08635	0.62	-1.3
1,086,666	+		HMPREF1058_RS08635	0.84	-0.8
1,086,813	+				+1.0
1,086,847	+		HMPREF1058_RS08630	0.14	-1.4
1,086,872	-		HMPREF1058_RS08630	0.17	+0.2
1,086,916	+		HMPREF1058_RS08630	0.24	-1.0
1,086,917	-		HMPREF1058_RS08630	0.24	-1.3
1,086,928	+		HMPREF1058_RS08630	0.26	-1.2