Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08635

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,085,671	+		HMPREF1058_RS08640	0.72	-1.7
1,085,858	-				-4.1
1,086,134	-				-1.3
1,086,134	-				-0.0
1,086,137	+				+0.3
1,086,138	-				-1.8
1,086,138	-				-1.5
1,086,138	-				+1.0
1,086,138	-				-0.8
1,086,226	+				+1.3
1,086,244	-				-0.3
1,086,304	-				+0.3
1,086,390	-		HMPREF1058_RS08635	0.15	-1.9
1,086,561	-		HMPREF1058_RS08635	0.58	-1.7
1,086,577	+		HMPREF1058_RS08635	0.62	-1.3
1,086,666	+		HMPREF1058_RS08635	0.84	-0.8
1,086,813	+				+1.0
1,086,847	+		HMPREF1058_RS08630	0.14	-1.4
1,086,872	-		HMPREF1058_RS08630	0.17	+0.2
1,086,916	+		HMPREF1058_RS08630	0.24	-1.0
1,086,917	-		HMPREF1058_RS08630	0.24	-1.3
1,086,928	+		HMPREF1058_RS08630	0.26	-1.2
1,087,116	-		HMPREF1058_RS08630	0.55	-0.7
1,087,180	+		HMPREF1058_RS08630	0.65	-1.0
1,087,181	-		HMPREF1058_RS08630	0.65	-0.8
1,087,181	-		HMPREF1058_RS08630	0.65	-0.1
1,087,181	-		HMPREF1058_RS08630	0.65	+0.2
1,087,198	+		HMPREF1058_RS08630	0.67	+0.3
1,087,233	-		HMPREF1058_RS08630	0.73	-1.8
1,087,316	+		HMPREF1058_RS08630	0.86	-0.9
1,087,338	+		HMPREF1058_RS08630	0.89	-0.8
1,087,338	+		HMPREF1058_RS08630	0.89	+1.2
1,087,339	-		HMPREF1058_RS08630	0.89	-1.4
1,087,339	-		HMPREF1058_RS08630	0.89	-0.0
1,087,339	-		HMPREF1058_RS08630	0.89	+0.1
1,087,339	-		HMPREF1058_RS08630	0.89	+0.0
1,087,394	+				-0.3
1,087,394	+				-1.0