Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08025

Experiment: Lacto-N-tetraose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS08030 and HMPREF1058_RS08025 are separated by 242 nucleotides HMPREF1058_RS08030: HMPREF1058_RS08030 - peptide chain release factor 1, at 70,060 to 71,175 _RS08030 HMPREF1058_RS08025: HMPREF1058_RS08025 - phosphoribosylformylglycinamidine cyclo-ligase, at 71,418 to 72,587 _RS08025 Position (kb) 71 72 73Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 71.252 kb on - strandat 71.259 kb on - strandat 71.330 kb on - strandat 71.334 kb on - strandat 71.343 kb on - strandat 71.405 kb on - strandat 71.558 kb on - strand, within HMPREF1058_RS08025at 71.583 kb on - strand, within HMPREF1058_RS08025at 71.583 kb on - strand, within HMPREF1058_RS08025at 71.587 kb on - strand, within HMPREF1058_RS08025at 71.881 kb on - strand, within HMPREF1058_RS08025at 71.906 kb on - strand, within HMPREF1058_RS08025at 72.005 kb on - strand, within HMPREF1058_RS08025at 72.005 kb on - strand, within HMPREF1058_RS08025at 72.009 kb on - strand, within HMPREF1058_RS08025at 72.034 kb on - strand, within HMPREF1058_RS08025at 72.034 kb on - strand, within HMPREF1058_RS08025at 72.112 kb on - strand, within HMPREF1058_RS08025at 72.112 kb on - strand, within HMPREF1058_RS08025at 72.253 kb on - strand, within HMPREF1058_RS08025at 72.258 kb on - strand, within HMPREF1058_RS08025at 72.258 kb on - strand, within HMPREF1058_RS08025at 72.291 kb on - strand, within HMPREF1058_RS08025at 72.367 kb on - strand, within HMPREF1058_RS08025at 72.414 kb on - strand, within HMPREF1058_RS08025at 72.597 kb on - strandat 72.631 kb on - strandat 72.631 kb on - strandat 72.698 kb on - strandat 72.698 kb on - strandat 72.726 kb on + strandat 72.758 kb on + strandat 72.758 kb on + strandat 72.758 kb on + strandat 72.762 kb on + strandat 72.762 kb on + strandat 72.781 kb on + strandat 72.786 kb on + strandat 72.791 kb on + strandat 72.796 kb on - strandat 72.798 kb on - strandat 72.802 kb on + strandat 72.803 kb on - strandat 72.818 kb on + strandat 72.821 kb on - strandat 72.846 kb on - strandat 72.886 kb on + strandat 73.018 kb on + strandat 73.018 kb on + strandat 73.061 kb on - strandat 73.080 kb on + strandat 73.081 kb on - strandat 73.238 kb on + strandat 73.239 kb on - strandat 73.239 kb on - strandat 73.291 kb on + strandat 73.357 kb on + strandat 73.506 kb on + strandat 73.539 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C)
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71,252 - +0.8
71,259 - -1.4
71,330 - +0.3
71,334 - -2.0
71,343 - -1.1
71,405 - -1.1
71,558 - HMPREF1058_RS08025 0.12 -1.2
71,583 - HMPREF1058_RS08025 0.14 +0.3
71,583 - HMPREF1058_RS08025 0.14 -1.2
71,587 - HMPREF1058_RS08025 0.14 -0.7
71,881 - HMPREF1058_RS08025 0.40 +0.0
71,906 - HMPREF1058_RS08025 0.42 -3.0
72,005 - HMPREF1058_RS08025 0.50 -2.8
72,005 - HMPREF1058_RS08025 0.50 +1.0
72,009 - HMPREF1058_RS08025 0.51 +2.8
72,034 - HMPREF1058_RS08025 0.53 -2.2
72,034 - HMPREF1058_RS08025 0.53 -1.6
72,112 - HMPREF1058_RS08025 0.59 -0.5
72,112 - HMPREF1058_RS08025 0.59 -1.9
72,253 - HMPREF1058_RS08025 0.71 -1.7
72,258 - HMPREF1058_RS08025 0.72 -1.4
72,258 - HMPREF1058_RS08025 0.72 -1.8
72,291 - HMPREF1058_RS08025 0.75 -0.1
72,367 - HMPREF1058_RS08025 0.81 -3.2
72,414 - HMPREF1058_RS08025 0.85 -2.3
72,597 - -0.2
72,631 - -0.7
72,631 - +0.5
72,698 - -2.7
72,698 - +0.7
72,726 + -1.2
72,758 + +0.1
72,758 + -0.6
72,758 + -0.6
72,762 + +0.2
72,762 + +0.0
72,781 + +0.4
72,786 + +1.6
72,791 + +0.4
72,796 - -0.9
72,798 - +1.8
72,802 + -1.9
72,803 - +0.8
72,818 + -2.2
72,821 - +0.3
72,846 - -1.8
72,886 + +0.0
73,018 + +0.2
73,018 + +0.5
73,061 - +0.2
73,080 + +0.6
73,081 - +1.8
73,238 + +0.8
73,239 - -1.3
73,239 - -0.2
73,291 + +1.8
73,357 + -1.2
73,506 + -0.3
73,539 - +0.2

Or see this region's nucleotide sequence