Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07560 and HMPREF1058_RS07555 are separated by 9 nucleotides HMPREF1058_RS07555 and HMPREF1058_RS07550 are separated by 115 nucleotides HMPREF1058_RS07550 and HMPREF1058_RS07545 are separated by 278 nucleotides HMPREF1058_RS07545 and HMPREF1058_RS07540 are separated by 21 nucleotides
HMPREF1058_RS07560: HMPREF1058_RS07560 - pyridoxal phosphate-dependent aminotransferase, at 190,823 to 191,986
_RS07560
HMPREF1058_RS07555: HMPREF1058_RS07555 - DUF3737 family protein, at 191,996 to 192,862
_RS07555
HMPREF1058_RS07550: HMPREF1058_RS07550 - alpha/beta hydrolase, at 192,978 to 194,033
_RS07550
HMPREF1058_RS07545: HMPREF1058_RS07545 - hypothetical protein, at 194,312 to 194,491
_RS07545
HMPREF1058_RS07540: HMPREF1058_RS07540 - acetyltransferase, at 194,513 to 195,088
_RS07540
Position (kb) 192
193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 191.979 kb on + strand at 191.998 kb on - strand at 192.068 kb on + strand at 192.068 kb on + strand at 192.134 kb on - strand, within HMPREF1058_RS07555 at 192.215 kb on - strand, within HMPREF1058_RS07555 at 192.272 kb on + strand, within HMPREF1058_RS07555 at 192.412 kb on - strand, within HMPREF1058_RS07555 at 192.441 kb on + strand, within HMPREF1058_RS07555 at 192.511 kb on + strand, within HMPREF1058_RS07555 at 192.525 kb on - strand, within HMPREF1058_RS07555 at 192.564 kb on - strand, within HMPREF1058_RS07555 at 192.634 kb on - strand, within HMPREF1058_RS07555 at 192.666 kb on + strand, within HMPREF1058_RS07555 at 192.709 kb on - strand, within HMPREF1058_RS07555 at 192.709 kb on - strand, within HMPREF1058_RS07555 at 192.748 kb on + strand, within HMPREF1058_RS07555 at 192.781 kb on + strand at 192.868 kb on - strand at 192.952 kb on - strand at 192.985 kb on - strand at 193.044 kb on + strand at 193.044 kb on + strand at 193.044 kb on + strand at 193.057 kb on - strand at 193.086 kb on - strand, within HMPREF1058_RS07550 at 193.122 kb on - strand, within HMPREF1058_RS07550 at 193.196 kb on + strand, within HMPREF1058_RS07550 at 193.294 kb on + strand, within HMPREF1058_RS07550 at 193.357 kb on + strand, within HMPREF1058_RS07550 at 193.477 kb on + strand, within HMPREF1058_RS07550 at 193.506 kb on - strand, within HMPREF1058_RS07550 at 193.741 kb on + strand, within HMPREF1058_RS07550 at 193.764 kb on + strand, within HMPREF1058_RS07550 at 194.159 kb on - strand at 194.301 kb on + strand at 194.312 kb on - strand at 194.373 kb on - strand, within HMPREF1058_RS07545 at 194.448 kb on - strand, within HMPREF1058_RS07545 at 194.490 kb on - strand at 194.666 kb on + strand, within HMPREF1058_RS07540 at 194.666 kb on + strand, within HMPREF1058_RS07540 at 194.854 kb on + strand, within HMPREF1058_RS07540 at 194.855 kb on - strand, within HMPREF1058_RS07540
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 191,979 + -0.3 191,998 - -0.7 192,068 + -1.5 192,068 + -0.8 192,134 - HMPREF1058_RS07555 0.16 -1.2 192,215 - HMPREF1058_RS07555 0.25 -0.5 192,272 + HMPREF1058_RS07555 0.32 +2.8 192,412 - HMPREF1058_RS07555 0.48 -0.7 192,441 + HMPREF1058_RS07555 0.51 +4.3 192,511 + HMPREF1058_RS07555 0.59 +0.3 192,525 - HMPREF1058_RS07555 0.61 +1.2 192,564 - HMPREF1058_RS07555 0.66 -0.1 192,634 - HMPREF1058_RS07555 0.74 -0.1 192,666 + HMPREF1058_RS07555 0.77 +0.6 192,709 - HMPREF1058_RS07555 0.82 +0.3 192,709 - HMPREF1058_RS07555 0.82 -1.2 192,748 + HMPREF1058_RS07555 0.87 +1.2 192,781 + +0.8 192,868 - +0.5 192,952 - -0.0 192,985 - -0.1 193,044 + +0.3 193,044 + -0.9 193,044 + -0.5 193,057 - -1.9 193,086 - HMPREF1058_RS07550 0.10 -3.3 193,122 - HMPREF1058_RS07550 0.14 -0.6 193,196 + HMPREF1058_RS07550 0.21 -0.8 193,294 + HMPREF1058_RS07550 0.30 -0.9 193,357 + HMPREF1058_RS07550 0.36 -1.7 193,477 + HMPREF1058_RS07550 0.47 -1.1 193,506 - HMPREF1058_RS07550 0.50 -0.9 193,741 + HMPREF1058_RS07550 0.72 +0.3 193,764 + HMPREF1058_RS07550 0.74 -0.1 194,159 - -1.6 194,301 + +0.0 194,312 - -1.1 194,373 - HMPREF1058_RS07545 0.34 -1.9 194,448 - HMPREF1058_RS07545 0.76 +0.4 194,490 - +1.2 194,666 + HMPREF1058_RS07540 0.27 +0.7 194,666 + HMPREF1058_RS07540 0.27 +0.4 194,854 + HMPREF1058_RS07540 0.59 -1.5 194,855 - HMPREF1058_RS07540 0.59 +0.8
Or see this region's nucleotide sequence