Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07545 and HMPREF1058_RS07540 are separated by 21 nucleotides HMPREF1058_RS07540 and HMPREF1058_RS07535 are separated by 14 nucleotides HMPREF1058_RS07535 and HMPREF1058_RS07530 are separated by 364 nucleotides
HMPREF1058_RS07545: HMPREF1058_RS07545 - hypothetical protein, at 194,312 to 194,491
_RS07545
HMPREF1058_RS07540: HMPREF1058_RS07540 - acetyltransferase, at 194,513 to 195,088
_RS07540
HMPREF1058_RS07535: HMPREF1058_RS07535 - hypothetical protein, at 195,103 to 195,390
_RS07535
HMPREF1058_RS07530: HMPREF1058_RS07530 - alpha/beta hydrolase, at 195,755 to 196,624
_RS07530
Position (kb) 195
196 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 194.159 kb on - strand at 194.301 kb on + strand at 194.312 kb on - strand at 194.373 kb on - strand, within HMPREF1058_RS07545 at 194.448 kb on - strand, within HMPREF1058_RS07545 at 194.490 kb on - strand at 194.666 kb on + strand, within HMPREF1058_RS07540 at 194.666 kb on + strand, within HMPREF1058_RS07540 at 194.854 kb on + strand, within HMPREF1058_RS07540 at 194.855 kb on - strand, within HMPREF1058_RS07540 at 195.080 kb on + strand at 195.081 kb on - strand at 195.088 kb on + strand at 195.089 kb on - strand at 195.107 kb on - strand at 195.125 kb on + strand at 195.200 kb on - strand, within HMPREF1058_RS07535 at 195.290 kb on + strand, within HMPREF1058_RS07535 at 195.291 kb on - strand, within HMPREF1058_RS07535 at 195.291 kb on - strand, within HMPREF1058_RS07535 at 195.346 kb on + strand, within HMPREF1058_RS07535 at 195.356 kb on - strand, within HMPREF1058_RS07535 at 195.381 kb on + strand at 195.381 kb on + strand at 195.491 kb on + strand at 195.521 kb on - strand at 195.574 kb on + strand at 195.575 kb on - strand at 195.578 kb on + strand at 195.619 kb on - strand at 195.630 kb on - strand at 195.683 kb on + strand at 195.689 kb on - strand at 195.716 kb on - strand at 195.716 kb on - strand at 195.720 kb on - strand at 195.754 kb on - strand at 195.979 kb on - strand, within HMPREF1058_RS07530 at 196.067 kb on + strand, within HMPREF1058_RS07530 at 196.073 kb on + strand, within HMPREF1058_RS07530 at 196.074 kb on - strand, within HMPREF1058_RS07530 at 196.076 kb on - strand, within HMPREF1058_RS07530 at 196.121 kb on - strand, within HMPREF1058_RS07530 at 196.125 kb on - strand, within HMPREF1058_RS07530 at 196.196 kb on + strand, within HMPREF1058_RS07530 at 196.196 kb on + strand, within HMPREF1058_RS07530 at 196.197 kb on - strand, within HMPREF1058_RS07530 at 196.249 kb on + strand, within HMPREF1058_RS07530 at 196.254 kb on + strand, within HMPREF1058_RS07530 at 196.294 kb on + strand, within HMPREF1058_RS07530 at 196.295 kb on - strand, within HMPREF1058_RS07530
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 194,159 - -1.6 194,301 + +0.0 194,312 - -1.1 194,373 - HMPREF1058_RS07545 0.34 -1.9 194,448 - HMPREF1058_RS07545 0.76 +0.4 194,490 - +1.2 194,666 + HMPREF1058_RS07540 0.27 +0.7 194,666 + HMPREF1058_RS07540 0.27 +0.4 194,854 + HMPREF1058_RS07540 0.59 -1.5 194,855 - HMPREF1058_RS07540 0.59 +0.8 195,080 + +0.8 195,081 - +0.8 195,088 + -0.1 195,089 - +0.1 195,107 - +0.5 195,125 + +2.0 195,200 - HMPREF1058_RS07535 0.34 +0.3 195,290 + HMPREF1058_RS07535 0.65 -0.4 195,291 - HMPREF1058_RS07535 0.65 +2.8 195,291 - HMPREF1058_RS07535 0.65 -1.4 195,346 + HMPREF1058_RS07535 0.84 +0.2 195,356 - HMPREF1058_RS07535 0.88 -1.1 195,381 + -1.1 195,381 + -0.2 195,491 + -0.4 195,521 - +1.3 195,574 + +1.6 195,575 - -0.2 195,578 + -0.2 195,619 - -0.6 195,630 - -1.6 195,683 + -2.0 195,689 - +0.4 195,716 - +2.8 195,716 - -0.5 195,720 - -1.9 195,754 - -0.9 195,979 - HMPREF1058_RS07530 0.26 -0.1 196,067 + HMPREF1058_RS07530 0.36 -0.3 196,073 + HMPREF1058_RS07530 0.37 -0.7 196,074 - HMPREF1058_RS07530 0.37 -1.1 196,076 - HMPREF1058_RS07530 0.37 +0.5 196,121 - HMPREF1058_RS07530 0.42 -1.7 196,125 - HMPREF1058_RS07530 0.43 -0.1 196,196 + HMPREF1058_RS07530 0.51 +1.1 196,196 + HMPREF1058_RS07530 0.51 -1.7 196,197 - HMPREF1058_RS07530 0.51 +0.6 196,249 + HMPREF1058_RS07530 0.57 +1.0 196,254 + HMPREF1058_RS07530 0.57 -0.1 196,294 + HMPREF1058_RS07530 0.62 -1.3 196,295 - HMPREF1058_RS07530 0.62 -0.0
Or see this region's nucleotide sequence