Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07520 and HMPREF1058_RS07515 are separated by 268 nucleotides HMPREF1058_RS07515 and HMPREF1058_RS07510 are separated by 67 nucleotides
HMPREF1058_RS07520: HMPREF1058_RS07520 - metallophosphoesterase, at 199,211 to 199,828
_RS07520
HMPREF1058_RS07515: HMPREF1058_RS07515 - helix-turn-helix transcriptional regulator, at 200,097 to 200,300
_RS07515
HMPREF1058_RS07510: HMPREF1058_RS07510 - DUF262 domain-containing protein, at 200,368 to 202,107
_RS07510
Position (kb) 200
201 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 199.112 kb on - strand at 199.112 kb on - strand at 199.186 kb on - strand at 199.215 kb on - strand at 199.227 kb on - strand at 199.246 kb on - strand at 199.332 kb on + strand, within HMPREF1058_RS07520 at 199.358 kb on + strand, within HMPREF1058_RS07520 at 199.441 kb on + strand, within HMPREF1058_RS07520 at 199.442 kb on - strand, within HMPREF1058_RS07520 at 199.442 kb on - strand, within HMPREF1058_RS07520 at 199.450 kb on + strand, within HMPREF1058_RS07520 at 199.457 kb on - strand, within HMPREF1058_RS07520 at 199.481 kb on - strand, within HMPREF1058_RS07520 at 199.506 kb on + strand, within HMPREF1058_RS07520 at 199.568 kb on - strand, within HMPREF1058_RS07520 at 199.633 kb on + strand, within HMPREF1058_RS07520 at 199.637 kb on + strand, within HMPREF1058_RS07520 at 199.638 kb on - strand, within HMPREF1058_RS07520 at 199.709 kb on - strand, within HMPREF1058_RS07520 at 199.777 kb on + strand at 199.778 kb on - strand at 199.802 kb on + strand at 199.803 kb on - strand at 199.812 kb on - strand at 199.861 kb on + strand at 199.868 kb on - strand at 199.899 kb on + strand at 199.947 kb on + strand at 199.948 kb on - strand at 199.948 kb on - strand at 199.963 kb on - strand at 199.963 kb on - strand at 199.974 kb on - strand at 200.019 kb on + strand at 200.020 kb on - strand at 200.020 kb on - strand at 200.033 kb on + strand at 200.042 kb on - strand at 200.051 kb on - strand at 200.059 kb on + strand at 200.060 kb on - strand at 200.108 kb on + strand at 200.233 kb on + strand, within HMPREF1058_RS07515 at 200.234 kb on - strand, within HMPREF1058_RS07515 at 200.251 kb on + strand, within HMPREF1058_RS07515 at 200.252 kb on - strand, within HMPREF1058_RS07515 at 200.252 kb on - strand, within HMPREF1058_RS07515 at 200.299 kb on - strand at 200.301 kb on + strand at 200.306 kb on + strand at 200.307 kb on - strand at 200.324 kb on + strand at 200.325 kb on - strand at 200.344 kb on + strand at 200.345 kb on - strand at 200.345 kb on - strand at 200.351 kb on + strand at 200.357 kb on + strand at 200.357 kb on + strand at 200.364 kb on + strand at 200.378 kb on + strand at 200.426 kb on - strand at 200.436 kb on + strand at 200.438 kb on + strand at 200.439 kb on - strand at 200.481 kb on + strand at 200.606 kb on + strand, within HMPREF1058_RS07510 at 200.606 kb on + strand, within HMPREF1058_RS07510 at 200.637 kb on + strand, within HMPREF1058_RS07510 at 200.638 kb on - strand, within HMPREF1058_RS07510 at 200.664 kb on + strand, within HMPREF1058_RS07510 at 200.669 kb on + strand, within HMPREF1058_RS07510 at 200.669 kb on + strand, within HMPREF1058_RS07510 at 200.670 kb on - strand, within HMPREF1058_RS07510 at 200.670 kb on - strand, within HMPREF1058_RS07510 at 200.676 kb on + strand, within HMPREF1058_RS07510 at 200.970 kb on - strand, within HMPREF1058_RS07510 at 201.054 kb on + strand, within HMPREF1058_RS07510 at 201.075 kb on + strand, within HMPREF1058_RS07510 at 201.199 kb on + strand, within HMPREF1058_RS07510 at 201.199 kb on + strand, within HMPREF1058_RS07510
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 199,112 - -1.2 199,112 - -0.4 199,186 - +0.2 199,215 - +0.9 199,227 - +0.3 199,246 - -0.2 199,332 + HMPREF1058_RS07520 0.20 +0.3 199,358 + HMPREF1058_RS07520 0.24 +0.8 199,441 + HMPREF1058_RS07520 0.37 +0.9 199,442 - HMPREF1058_RS07520 0.37 -2.3 199,442 - HMPREF1058_RS07520 0.37 -1.1 199,450 + HMPREF1058_RS07520 0.39 +0.1 199,457 - HMPREF1058_RS07520 0.40 -0.9 199,481 - HMPREF1058_RS07520 0.44 -0.0 199,506 + HMPREF1058_RS07520 0.48 -1.4 199,568 - HMPREF1058_RS07520 0.58 -0.1 199,633 + HMPREF1058_RS07520 0.68 +2.8 199,637 + HMPREF1058_RS07520 0.69 +0.9 199,638 - HMPREF1058_RS07520 0.69 -0.0 199,709 - HMPREF1058_RS07520 0.81 +0.8 199,777 + -0.7 199,778 - +2.8 199,802 + -0.1 199,803 - -0.7 199,812 - +1.3 199,861 + -0.2 199,868 - -0.4 199,899 + +2.0 199,947 + +0.3 199,948 - -1.7 199,948 - -0.3 199,963 - +1.6 199,963 - +1.7 199,974 - +0.2 200,019 + +0.8 200,020 - -0.2 200,020 - -0.5 200,033 + -2.1 200,042 - -1.1 200,051 - +0.1 200,059 + -0.9 200,060 - -1.5 200,108 + -0.9 200,233 + HMPREF1058_RS07515 0.67 -1.1 200,234 - HMPREF1058_RS07515 0.67 +0.6 200,251 + HMPREF1058_RS07515 0.75 -0.4 200,252 - HMPREF1058_RS07515 0.76 -1.3 200,252 - HMPREF1058_RS07515 0.76 -0.5 200,299 - -1.4 200,301 + +4.3 200,306 + +0.8 200,307 - +0.8 200,324 + -0.9 200,325 - -1.8 200,344 + -0.1 200,345 - -1.3 200,345 - -0.1 200,351 + +0.8 200,357 + -0.5 200,357 + -1.5 200,364 + +1.1 200,378 + -1.1 200,426 - -1.3 200,436 + +0.5 200,438 + -1.0 200,439 - -0.7 200,481 + -0.7 200,606 + HMPREF1058_RS07510 0.14 -1.4 200,606 + HMPREF1058_RS07510 0.14 -0.3 200,637 + HMPREF1058_RS07510 0.15 -0.3 200,638 - HMPREF1058_RS07510 0.16 +0.5 200,664 + HMPREF1058_RS07510 0.17 -1.1 200,669 + HMPREF1058_RS07510 0.17 +0.8 200,669 + HMPREF1058_RS07510 0.17 -1.4 200,670 - HMPREF1058_RS07510 0.17 +2.2 200,670 - HMPREF1058_RS07510 0.17 -0.8 200,676 + HMPREF1058_RS07510 0.18 +0.9 200,970 - HMPREF1058_RS07510 0.35 -0.0 201,054 + HMPREF1058_RS07510 0.39 +0.3 201,075 + HMPREF1058_RS07510 0.41 -0.9 201,199 + HMPREF1058_RS07510 0.48 -0.6 201,199 + HMPREF1058_RS07510 0.48 -0.5
Or see this region's nucleotide sequence