Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07185 and HMPREF1058_RS07180 are separated by 21 nucleotides HMPREF1058_RS07180 and HMPREF1058_RS07175 are separated by 12 nucleotides
HMPREF1058_RS07185: HMPREF1058_RS07185 - anthranilate phosphoribosyltransferase, at 292,442 to 293,437
_RS07185
HMPREF1058_RS07180: HMPREF1058_RS07180 - aminodeoxychorismate/anthranilate synthase component II, at 293,459 to 294,049
_RS07180
HMPREF1058_RS07175: HMPREF1058_RS07175 - anthranilate synthase component I family protein, at 294,062 to 295,462
_RS07175
Position (kb) 293
294
295 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 292.557 kb on - strand at 292.557 kb on - strand, within HMPREF1058_RS07185 at 292.698 kb on - strand, within HMPREF1058_RS07185 at 292.834 kb on - strand, within HMPREF1058_RS07185 at 292.920 kb on - strand, within HMPREF1058_RS07185 at 292.924 kb on + strand, within HMPREF1058_RS07185 at 292.928 kb on + strand, within HMPREF1058_RS07185 at 292.929 kb on - strand, within HMPREF1058_RS07185 at 292.929 kb on - strand, within HMPREF1058_RS07185 at 292.929 kb on - strand, within HMPREF1058_RS07185 at 292.995 kb on + strand, within HMPREF1058_RS07185 at 292.995 kb on - strand, within HMPREF1058_RS07185 at 292.996 kb on - strand, within HMPREF1058_RS07185 at 292.996 kb on - strand, within HMPREF1058_RS07185 at 293.106 kb on + strand, within HMPREF1058_RS07185 at 293.164 kb on + strand, within HMPREF1058_RS07185 at 293.180 kb on - strand, within HMPREF1058_RS07185 at 293.237 kb on + strand, within HMPREF1058_RS07185 at 293.346 kb on + strand at 293.445 kb on - strand at 293.445 kb on - strand at 293.448 kb on + strand at 293.448 kb on + strand at 293.551 kb on + strand, within HMPREF1058_RS07180 at 293.686 kb on - strand, within HMPREF1058_RS07180 at 293.744 kb on + strand, within HMPREF1058_RS07180 at 293.745 kb on - strand, within HMPREF1058_RS07180 at 293.756 kb on + strand, within HMPREF1058_RS07180 at 293.756 kb on + strand, within HMPREF1058_RS07180 at 293.820 kb on - strand, within HMPREF1058_RS07180 at 293.820 kb on - strand, within HMPREF1058_RS07180 at 293.820 kb on - strand, within HMPREF1058_RS07180 at 293.855 kb on - strand, within HMPREF1058_RS07180 at 293.960 kb on + strand, within HMPREF1058_RS07180 at 293.963 kb on + strand, within HMPREF1058_RS07180 at 294.014 kb on - strand at 294.025 kb on - strand at 294.025 kb on - strand at 294.025 kb on - strand at 294.025 kb on - strand at 294.039 kb on - strand at 294.125 kb on + strand at 294.148 kb on + strand at 294.149 kb on - strand at 294.153 kb on - strand at 294.205 kb on + strand, within HMPREF1058_RS07175 at 294.205 kb on + strand, within HMPREF1058_RS07175 at 294.206 kb on - strand, within HMPREF1058_RS07175 at 294.317 kb on + strand, within HMPREF1058_RS07175 at 294.318 kb on - strand, within HMPREF1058_RS07175 at 294.361 kb on + strand, within HMPREF1058_RS07175 at 294.362 kb on - strand, within HMPREF1058_RS07175 at 294.510 kb on - strand, within HMPREF1058_RS07175 at 294.518 kb on + strand, within HMPREF1058_RS07175 at 294.518 kb on + strand, within HMPREF1058_RS07175 at 294.766 kb on - strand at 294.908 kb on - strand, within HMPREF1058_RS07175 at 294.912 kb on + strand, within HMPREF1058_RS07175 at 294.912 kb on + strand, within HMPREF1058_RS07175 at 294.913 kb on - strand, within HMPREF1058_RS07175 at 294.913 kb on - strand, within HMPREF1058_RS07175 at 294.913 kb on - strand, within HMPREF1058_RS07175 at 294.917 kb on - strand, within HMPREF1058_RS07175 at 295.027 kb on + strand, within HMPREF1058_RS07175 at 295.031 kb on + strand, within HMPREF1058_RS07175 at 295.037 kb on - strand, within HMPREF1058_RS07175 at 295.038 kb on + strand at 295.038 kb on + strand, within HMPREF1058_RS07175 at 295.039 kb on - strand, within HMPREF1058_RS07175 at 295.039 kb on - strand, within HMPREF1058_RS07175
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 292,557 - +1.2 292,557 - HMPREF1058_RS07185 0.12 -2.0 292,698 - HMPREF1058_RS07185 0.26 -3.1 292,834 - HMPREF1058_RS07185 0.39 -3.0 292,920 - HMPREF1058_RS07185 0.48 -1.8 292,924 + HMPREF1058_RS07185 0.48 -0.9 292,928 + HMPREF1058_RS07185 0.49 -1.8 292,929 - HMPREF1058_RS07185 0.49 -3.3 292,929 - HMPREF1058_RS07185 0.49 +0.5 292,929 - HMPREF1058_RS07185 0.49 -3.0 292,995 + HMPREF1058_RS07185 0.56 +0.4 292,995 - HMPREF1058_RS07185 0.56 +0.0 292,996 - HMPREF1058_RS07185 0.56 -3.5 292,996 - HMPREF1058_RS07185 0.56 -3.0 293,106 + HMPREF1058_RS07185 0.67 +0.0 293,164 + HMPREF1058_RS07185 0.72 +1.0 293,180 - HMPREF1058_RS07185 0.74 +1.0 293,237 + HMPREF1058_RS07185 0.80 -0.4 293,346 + -1.9 293,445 - -1.7 293,445 - -0.7 293,448 + -3.2 293,448 + -1.7 293,551 + HMPREF1058_RS07180 0.16 -2.3 293,686 - HMPREF1058_RS07180 0.38 -0.5 293,744 + HMPREF1058_RS07180 0.48 -0.2 293,745 - HMPREF1058_RS07180 0.48 +0.2 293,756 + HMPREF1058_RS07180 0.50 -0.4 293,756 + HMPREF1058_RS07180 0.50 +2.0 293,820 - HMPREF1058_RS07180 0.61 +2.3 293,820 - HMPREF1058_RS07180 0.61 +1.5 293,820 - HMPREF1058_RS07180 0.61 -0.7 293,855 - HMPREF1058_RS07180 0.67 -2.5 293,960 + HMPREF1058_RS07180 0.85 -0.6 293,963 + HMPREF1058_RS07180 0.85 -0.2 294,014 - -0.5 294,025 - -0.2 294,025 - -1.1 294,025 - -1.5 294,025 - -0.5 294,039 - +0.3 294,125 + -1.8 294,148 + +0.2 294,149 - +1.5 294,153 - -0.8 294,205 + HMPREF1058_RS07175 0.10 -1.7 294,205 + HMPREF1058_RS07175 0.10 -0.3 294,206 - HMPREF1058_RS07175 0.10 -2.0 294,317 + HMPREF1058_RS07175 0.18 -1.8 294,318 - HMPREF1058_RS07175 0.18 -0.7 294,361 + HMPREF1058_RS07175 0.21 -0.3 294,362 - HMPREF1058_RS07175 0.21 +4.3 294,510 - HMPREF1058_RS07175 0.32 -0.2 294,518 + HMPREF1058_RS07175 0.33 -3.6 294,518 + HMPREF1058_RS07175 0.33 +1.5 294,766 - +1.2 294,908 - HMPREF1058_RS07175 0.60 -1.6 294,912 + HMPREF1058_RS07175 0.61 -1.7 294,912 + HMPREF1058_RS07175 0.61 -2.1 294,913 - HMPREF1058_RS07175 0.61 -1.3 294,913 - HMPREF1058_RS07175 0.61 -2.8 294,913 - HMPREF1058_RS07175 0.61 +0.5 294,917 - HMPREF1058_RS07175 0.61 -0.6 295,027 + HMPREF1058_RS07175 0.69 +0.0 295,031 + HMPREF1058_RS07175 0.69 +0.6 295,037 - HMPREF1058_RS07175 0.70 -0.1 295,038 + +2.3 295,038 + HMPREF1058_RS07175 0.70 +4.3 295,039 - HMPREF1058_RS07175 0.70 +0.1 295,039 - HMPREF1058_RS07175 0.70 -2.3
Or see this region's nucleotide sequence