Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06385 and HMPREF1058_RS06380 are separated by 91 nucleotides HMPREF1058_RS06380 and HMPREF1058_RS06375 are separated by 300 nucleotides
HMPREF1058_RS06385: HMPREF1058_RS06385 - transglutaminase domain-containing protein, at 491,075 to 493,738
_RS06385
HMPREF1058_RS06380: HMPREF1058_RS06380 - copper homeostasis protein CutC, at 493,830 to 494,693
_RS06380
HMPREF1058_RS06375: HMPREF1058_RS06375 - glutaminase A, at 494,994 to 495,956
_RS06375
Position (kb) 493
494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 492.871 kb on + strand, within HMPREF1058_RS06385 at 492.871 kb on + strand, within HMPREF1058_RS06385 at 492.871 kb on + strand, within HMPREF1058_RS06385 at 493.016 kb on + strand at 493.017 kb on - strand, within HMPREF1058_RS06385 at 493.020 kb on - strand, within HMPREF1058_RS06385 at 493.076 kb on + strand, within HMPREF1058_RS06385 at 493.160 kb on + strand, within HMPREF1058_RS06385 at 493.160 kb on + strand, within HMPREF1058_RS06385 at 493.282 kb on + strand, within HMPREF1058_RS06385 at 493.316 kb on - strand, within HMPREF1058_RS06385 at 493.316 kb on - strand, within HMPREF1058_RS06385 at 493.322 kb on - strand, within HMPREF1058_RS06385 at 493.351 kb on + strand, within HMPREF1058_RS06385 at 493.351 kb on + strand, within HMPREF1058_RS06385 at 493.380 kb on - strand, within HMPREF1058_RS06385 at 493.508 kb on + strand at 493.689 kb on - strand at 493.690 kb on + strand at 493.725 kb on + strand at 493.729 kb on + strand at 493.729 kb on + strand at 493.730 kb on - strand at 493.736 kb on + strand at 493.748 kb on + strand at 493.799 kb on - strand at 493.802 kb on + strand at 493.803 kb on - strand at 493.803 kb on - strand at 493.824 kb on - strand at 493.832 kb on - strand at 494.017 kb on - strand, within HMPREF1058_RS06380 at 494.034 kb on + strand, within HMPREF1058_RS06380 at 494.075 kb on + strand, within HMPREF1058_RS06380 at 494.129 kb on + strand, within HMPREF1058_RS06380 at 494.133 kb on - strand, within HMPREF1058_RS06380 at 494.243 kb on + strand, within HMPREF1058_RS06380 at 494.256 kb on + strand, within HMPREF1058_RS06380 at 494.384 kb on - strand, within HMPREF1058_RS06380 at 494.484 kb on + strand, within HMPREF1058_RS06380 at 494.538 kb on + strand, within HMPREF1058_RS06380 at 494.604 kb on + strand, within HMPREF1058_RS06380 at 494.618 kb on - strand at 494.694 kb on - strand at 494.706 kb on + strand at 494.858 kb on - strand at 494.888 kb on + strand at 495.024 kb on + strand at 495.048 kb on - strand at 495.050 kb on + strand at 495.050 kb on + strand at 495.401 kb on - strand, within HMPREF1058_RS06375 at 495.405 kb on - strand, within HMPREF1058_RS06375 at 495.507 kb on + strand, within HMPREF1058_RS06375
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 492,871 + HMPREF1058_RS06385 0.67 +2.4 492,871 + HMPREF1058_RS06385 0.67 +0.8 492,871 + HMPREF1058_RS06385 0.67 -0.8 493,016 + +1.8 493,017 - HMPREF1058_RS06385 0.73 +0.1 493,020 - HMPREF1058_RS06385 0.73 +0.5 493,076 + HMPREF1058_RS06385 0.75 -0.9 493,160 + HMPREF1058_RS06385 0.78 -0.0 493,160 + HMPREF1058_RS06385 0.78 -0.6 493,282 + HMPREF1058_RS06385 0.83 -0.4 493,316 - HMPREF1058_RS06385 0.84 -0.2 493,316 - HMPREF1058_RS06385 0.84 +0.0 493,322 - HMPREF1058_RS06385 0.84 +0.2 493,351 + HMPREF1058_RS06385 0.85 +0.0 493,351 + HMPREF1058_RS06385 0.85 -0.7 493,380 - HMPREF1058_RS06385 0.87 -1.0 493,508 + -1.1 493,689 - -0.2 493,690 + -0.2 493,725 + +0.2 493,729 + -2.6 493,729 + -0.8 493,730 - +0.9 493,736 + -2.1 493,748 + +0.7 493,799 - +0.9 493,802 + +1.2 493,803 - -0.2 493,803 - -0.5 493,824 - +0.9 493,832 - +0.5 494,017 - HMPREF1058_RS06380 0.22 -0.8 494,034 + HMPREF1058_RS06380 0.24 +0.4 494,075 + HMPREF1058_RS06380 0.28 -0.8 494,129 + HMPREF1058_RS06380 0.35 -2.5 494,133 - HMPREF1058_RS06380 0.35 -1.0 494,243 + HMPREF1058_RS06380 0.48 -1.0 494,256 + HMPREF1058_RS06380 0.49 -1.0 494,384 - HMPREF1058_RS06380 0.64 -1.4 494,484 + HMPREF1058_RS06380 0.76 +1.0 494,538 + HMPREF1058_RS06380 0.82 -0.8 494,604 + HMPREF1058_RS06380 0.90 -0.9 494,618 - +0.8 494,694 - -3.3 494,706 + -1.5 494,858 - -0.1 494,888 + -1.6 495,024 + +1.6 495,048 - -1.3 495,050 + +1.0 495,050 + +2.4 495,401 - HMPREF1058_RS06375 0.42 +3.8 495,405 - HMPREF1058_RS06375 0.43 +0.1 495,507 + HMPREF1058_RS06375 0.53 -0.8
Or see this region's nucleotide sequence