Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06270 and HMPREF1058_RS06265 are separated by 142 nucleotides HMPREF1058_RS06265 and HMPREF1058_RS06260 overlap by 4 nucleotides HMPREF1058_RS06260 and HMPREF1058_RS06255 are separated by 38 nucleotides
HMPREF1058_RS06270: HMPREF1058_RS06270 - C69 family dipeptidase, at 520,142 to 521,740
_RS06270
HMPREF1058_RS06265: HMPREF1058_RS06265 - Crp/Fnr family transcriptional regulator, at 521,883 to 522,461
_RS06265
HMPREF1058_RS06260: HMPREF1058_RS06260 - DUF3943 domain-containing protein, at 522,458 to 523,930
_RS06260
HMPREF1058_RS06255: HMPREF1058_RS06255 - hypothetical protein, at 523,969 to 525,354
_RS06255
Position (kb) 522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 521.470 kb on + strand, within HMPREF1058_RS06270 at 521.470 kb on + strand, within HMPREF1058_RS06270 at 521.591 kb on - strand at 521.591 kb on - strand at 521.645 kb on - strand at 521.645 kb on - strand at 521.706 kb on - strand at 521.720 kb on + strand at 521.758 kb on + strand at 521.758 kb on + strand at 521.774 kb on + strand at 521.788 kb on + strand at 521.825 kb on - strand at 521.825 kb on - strand at 521.891 kb on + strand at 521.891 kb on + strand at 521.891 kb on + strand at 521.895 kb on - strand at 521.897 kb on - strand at 521.897 kb on - strand at 521.902 kb on + strand at 521.903 kb on - strand at 521.906 kb on + strand at 521.907 kb on - strand at 521.979 kb on - strand, within HMPREF1058_RS06265 at 522.043 kb on + strand, within HMPREF1058_RS06265 at 522.044 kb on - strand, within HMPREF1058_RS06265 at 522.074 kb on + strand, within HMPREF1058_RS06265 at 522.074 kb on + strand, within HMPREF1058_RS06265 at 522.074 kb on + strand, within HMPREF1058_RS06265 at 522.102 kb on - strand, within HMPREF1058_RS06265 at 522.197 kb on - strand, within HMPREF1058_RS06265 at 522.342 kb on + strand, within HMPREF1058_RS06265 at 522.345 kb on - strand, within HMPREF1058_RS06265 at 522.396 kb on + strand, within HMPREF1058_RS06265 at 522.397 kb on - strand, within HMPREF1058_RS06265 at 522.409 kb on + strand at 522.413 kb on - strand at 522.469 kb on - strand at 522.501 kb on + strand at 522.525 kb on + strand at 522.526 kb on - strand at 522.547 kb on - strand at 522.582 kb on - strand at 522.620 kb on + strand, within HMPREF1058_RS06260 at 522.799 kb on - strand, within HMPREF1058_RS06260 at 522.813 kb on - strand, within HMPREF1058_RS06260 at 522.813 kb on - strand, within HMPREF1058_RS06260 at 522.819 kb on + strand, within HMPREF1058_RS06260 at 522.820 kb on - strand, within HMPREF1058_RS06260 at 523.094 kb on - strand, within HMPREF1058_RS06260 at 523.188 kb on - strand, within HMPREF1058_RS06260 at 523.230 kb on + strand, within HMPREF1058_RS06260 at 523.433 kb on + strand, within HMPREF1058_RS06260 at 523.447 kb on + strand, within HMPREF1058_RS06260 at 523.447 kb on + strand, within HMPREF1058_RS06260 at 523.533 kb on - strand, within HMPREF1058_RS06260 at 523.550 kb on - strand, within HMPREF1058_RS06260 at 523.563 kb on + strand, within HMPREF1058_RS06260 at 523.585 kb on + strand, within HMPREF1058_RS06260 at 523.739 kb on + strand, within HMPREF1058_RS06260 at 523.838 kb on - strand at 523.840 kb on - strand at 523.890 kb on - strand at 523.922 kb on + strand at 523.942 kb on + strand at 523.947 kb on + strand at 524.026 kb on - strand at 524.121 kb on - strand, within HMPREF1058_RS06255 at 524.121 kb on - strand, within HMPREF1058_RS06255 at 524.164 kb on + strand, within HMPREF1058_RS06255 at 524.179 kb on + strand, within HMPREF1058_RS06255 at 524.180 kb on - strand, within HMPREF1058_RS06255 at 524.191 kb on + strand, within HMPREF1058_RS06255 at 524.298 kb on + strand, within HMPREF1058_RS06255 at 524.317 kb on - strand, within HMPREF1058_RS06255 at 524.391 kb on + strand, within HMPREF1058_RS06255 at 524.392 kb on - strand, within HMPREF1058_RS06255 at 524.506 kb on + strand, within HMPREF1058_RS06255 at 524.506 kb on + strand, within HMPREF1058_RS06255 at 524.507 kb on - strand, within HMPREF1058_RS06255 at 524.507 kb on - strand, within HMPREF1058_RS06255 at 524.520 kb on - strand, within HMPREF1058_RS06255 at 524.698 kb on + strand, within HMPREF1058_RS06255 at 524.705 kb on - strand, within HMPREF1058_RS06255 at 524.800 kb on + strand, within HMPREF1058_RS06255 at 524.800 kb on + strand, within HMPREF1058_RS06255 at 524.801 kb on - strand, within HMPREF1058_RS06255
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 521,470 + HMPREF1058_RS06270 0.83 -0.6 521,470 + HMPREF1058_RS06270 0.83 -0.7 521,591 - +0.6 521,591 - -1.4 521,645 - -0.4 521,645 - +1.4 521,706 - +0.3 521,720 + +0.5 521,758 + -0.3 521,758 + +1.8 521,774 + +3.0 521,788 + -0.9 521,825 - +1.6 521,825 - -0.4 521,891 + -0.4 521,891 + -0.2 521,891 + -1.5 521,895 - -0.1 521,897 - +0.1 521,897 - +1.5 521,902 + -0.4 521,903 - -0.4 521,906 + +0.4 521,907 - -2.2 521,979 - HMPREF1058_RS06265 0.17 +1.2 522,043 + HMPREF1058_RS06265 0.28 -1.4 522,044 - HMPREF1058_RS06265 0.28 -0.0 522,074 + HMPREF1058_RS06265 0.33 -0.7 522,074 + HMPREF1058_RS06265 0.33 -0.3 522,074 + HMPREF1058_RS06265 0.33 -2.0 522,102 - HMPREF1058_RS06265 0.38 -2.3 522,197 - HMPREF1058_RS06265 0.54 -0.6 522,342 + HMPREF1058_RS06265 0.79 -0.4 522,345 - HMPREF1058_RS06265 0.80 -1.1 522,396 + HMPREF1058_RS06265 0.89 -0.3 522,397 - HMPREF1058_RS06265 0.89 -1.3 522,409 + -1.2 522,413 - +0.0 522,469 - +0.2 522,501 + +1.3 522,525 + -0.2 522,526 - -0.6 522,547 - -1.7 522,582 - +0.0 522,620 + HMPREF1058_RS06260 0.11 -2.6 522,799 - HMPREF1058_RS06260 0.23 +0.9 522,813 - HMPREF1058_RS06260 0.24 -1.3 522,813 - HMPREF1058_RS06260 0.24 -1.8 522,819 + HMPREF1058_RS06260 0.25 -0.4 522,820 - HMPREF1058_RS06260 0.25 -0.8 523,094 - HMPREF1058_RS06260 0.43 +1.4 523,188 - HMPREF1058_RS06260 0.50 -1.5 523,230 + HMPREF1058_RS06260 0.52 +0.1 523,433 + HMPREF1058_RS06260 0.66 -1.5 523,447 + HMPREF1058_RS06260 0.67 -2.1 523,447 + HMPREF1058_RS06260 0.67 +0.8 523,533 - HMPREF1058_RS06260 0.73 -0.2 523,550 - HMPREF1058_RS06260 0.74 +0.4 523,563 + HMPREF1058_RS06260 0.75 +0.0 523,585 + HMPREF1058_RS06260 0.77 -1.3 523,739 + HMPREF1058_RS06260 0.87 -1.0 523,838 - +0.0 523,840 - +1.8 523,890 - -0.0 523,922 + -0.5 523,942 + +0.4 523,947 + -0.3 524,026 - +0.7 524,121 - HMPREF1058_RS06255 0.11 -0.8 524,121 - HMPREF1058_RS06255 0.11 -2.0 524,164 + HMPREF1058_RS06255 0.14 -0.7 524,179 + HMPREF1058_RS06255 0.15 -0.4 524,180 - HMPREF1058_RS06255 0.15 -0.0 524,191 + HMPREF1058_RS06255 0.16 -2.2 524,298 + HMPREF1058_RS06255 0.24 -2.9 524,317 - HMPREF1058_RS06255 0.25 -1.5 524,391 + HMPREF1058_RS06255 0.30 +0.3 524,392 - HMPREF1058_RS06255 0.31 -1.0 524,506 + HMPREF1058_RS06255 0.39 -0.4 524,506 + HMPREF1058_RS06255 0.39 +0.2 524,507 - HMPREF1058_RS06255 0.39 -2.2 524,507 - HMPREF1058_RS06255 0.39 -1.7 524,520 - HMPREF1058_RS06255 0.40 +1.6 524,698 + HMPREF1058_RS06255 0.53 +0.9 524,705 - HMPREF1058_RS06255 0.53 -1.1 524,800 + HMPREF1058_RS06255 0.60 -0.9 524,800 + HMPREF1058_RS06255 0.60 -0.7 524,801 - HMPREF1058_RS06255 0.60 +1.0
Or see this region's nucleotide sequence