Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05725

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
91,909	-				+1.4
91,912	+		HMPREF1058_RS05730	0.39	-1.1
91,913	-		HMPREF1058_RS05730	0.39	-1.1
92,523	+				-1.2
92,597	+				-0.3
92,598	-				-0.4
92,598	-				+0.1
92,599	+				+0.6
92,600	-				+2.8
92,602	-				-1.2
92,604	-				+0.0
92,638	+				-0.4
92,638	+				+1.8
92,649	+				-0.2
92,649	+				+3.4
92,650	-				-0.1
92,650	-				-0.9
92,650	-				-1.1
92,664	+				-2.3
92,750	+				-0.7
92,774	+				+2.2
92,774	+				-0.4
92,775	-				-0.5
92,775	-				-0.4
92,798	+				+0.8
92,799	-				-0.5
92,838	-				+1.8
92,839	+				+1.5
92,840	-				+1.2
92,840	-				+0.4
92,946	-		HMPREF1058_RS05725	0.22	-0.6
92,947	+		HMPREF1058_RS05725	0.22	-0.4
93,007	-		HMPREF1058_RS05725	0.37	-1.7
93,008	+		HMPREF1058_RS05725	0.37	-1.3
93,883	+		HMPREF1058_RS05720	0.51	-0.7
93,909	-		HMPREF1058_RS05720	0.53	-1.0
93,909	-		HMPREF1058_RS05720	0.53	-1.3
93,909	-		HMPREF1058_RS05720	0.53	+0.2
93,909	-		HMPREF1058_RS05720	0.53	+0.8
93,980	+		HMPREF1058_RS05720	0.59	+0.0
94,075	+		HMPREF1058_RS05720	0.67	-0.1
94,084	+		HMPREF1058_RS05720	0.67	+1.7
94,085	-		HMPREF1058_RS05720	0.67	+0.1
94,117	+		HMPREF1058_RS05720	0.70	+0.0
94,212	-		HMPREF1058_RS05720	0.78	-0.4