Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05025 and HMPREF1058_RS05020 are separated by 86 nucleotides HMPREF1058_RS05020 and HMPREF1058_RS05015 are separated by 6 nucleotides HMPREF1058_RS05015 and HMPREF1058_RS05010 are separated by 147 nucleotides HMPREF1058_RS05010 and HMPREF1058_RS05005 are separated by 133 nucleotides
HMPREF1058_RS05025: HMPREF1058_RS05025 - alanine dehydrogenase, at 266,192 to 267,283
_RS05025
HMPREF1058_RS05020: HMPREF1058_RS05020 - twin-arginine translocase subunit TatC, at 267,370 to 268,200
_RS05020
HMPREF1058_RS05015: HMPREF1058_RS05015 - twin-arginine translocase TatA/TatE family subunit, at 268,207 to 268,410
_RS05015
HMPREF1058_RS05010: HMPREF1058_RS05010 - hypothetical protein, at 268,558 to 269,067
_RS05010
HMPREF1058_RS05005: HMPREF1058_RS05005 - hypothetical protein, at 269,201 to 269,683
_RS05005
Position (kb) 268
269 Strain fitness (log2 ratio) -2
-1
0
1
2 at 267.317 kb on + strand at 267.395 kb on - strand at 267.430 kb on + strand at 267.462 kb on - strand, within HMPREF1058_RS05020 at 267.462 kb on - strand, within HMPREF1058_RS05020 at 267.466 kb on - strand, within HMPREF1058_RS05020 at 267.490 kb on - strand, within HMPREF1058_RS05020 at 267.504 kb on + strand, within HMPREF1058_RS05020 at 267.505 kb on - strand, within HMPREF1058_RS05020 at 267.534 kb on + strand, within HMPREF1058_RS05020 at 267.579 kb on + strand, within HMPREF1058_RS05020 at 267.664 kb on - strand, within HMPREF1058_RS05020 at 267.672 kb on - strand, within HMPREF1058_RS05020 at 267.684 kb on + strand, within HMPREF1058_RS05020 at 267.738 kb on + strand, within HMPREF1058_RS05020 at 267.738 kb on + strand, within HMPREF1058_RS05020 at 267.739 kb on - strand, within HMPREF1058_RS05020 at 267.802 kb on + strand, within HMPREF1058_RS05020 at 267.838 kb on + strand, within HMPREF1058_RS05020 at 267.869 kb on + strand, within HMPREF1058_RS05020 at 267.997 kb on - strand, within HMPREF1058_RS05020 at 268.180 kb on + strand at 268.181 kb on - strand at 268.230 kb on + strand at 268.243 kb on + strand, within HMPREF1058_RS05015 at 268.243 kb on + strand, within HMPREF1058_RS05015 at 268.244 kb on - strand, within HMPREF1058_RS05015 at 268.367 kb on - strand, within HMPREF1058_RS05015 at 268.367 kb on - strand, within HMPREF1058_RS05015 at 268.421 kb on - strand at 268.421 kb on - strand at 268.679 kb on - strand, within HMPREF1058_RS05010 at 268.734 kb on + strand, within HMPREF1058_RS05010 at 268.758 kb on + strand, within HMPREF1058_RS05010 at 268.759 kb on - strand, within HMPREF1058_RS05010 at 268.760 kb on + strand, within HMPREF1058_RS05010 at 268.792 kb on + strand, within HMPREF1058_RS05010 at 268.793 kb on - strand, within HMPREF1058_RS05010 at 268.800 kb on + strand, within HMPREF1058_RS05010 at 268.801 kb on - strand, within HMPREF1058_RS05010 at 268.811 kb on - strand, within HMPREF1058_RS05010 at 268.842 kb on + strand, within HMPREF1058_RS05010 at 268.892 kb on + strand, within HMPREF1058_RS05010 at 268.896 kb on + strand, within HMPREF1058_RS05010 at 268.897 kb on - strand, within HMPREF1058_RS05010 at 268.897 kb on - strand, within HMPREF1058_RS05010 at 268.899 kb on - strand, within HMPREF1058_RS05010 at 268.906 kb on + strand, within HMPREF1058_RS05010 at 268.910 kb on - strand at 268.935 kb on + strand, within HMPREF1058_RS05010 at 268.935 kb on + strand, within HMPREF1058_RS05010 at 268.987 kb on - strand, within HMPREF1058_RS05010 at 269.072 kb on - strand at 269.072 kb on - strand at 269.072 kb on - strand at 269.086 kb on + strand at 269.087 kb on - strand at 269.087 kb on - strand at 269.099 kb on + strand at 269.112 kb on + strand at 269.169 kb on + strand at 269.294 kb on + strand, within HMPREF1058_RS05005
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 267,317 + -0.7 267,395 - -1.1 267,430 + -1.1 267,462 - HMPREF1058_RS05020 0.11 -1.9 267,462 - HMPREF1058_RS05020 0.11 +1.2 267,466 - HMPREF1058_RS05020 0.12 -0.9 267,490 - HMPREF1058_RS05020 0.14 +1.4 267,504 + HMPREF1058_RS05020 0.16 -0.8 267,505 - HMPREF1058_RS05020 0.16 -0.7 267,534 + HMPREF1058_RS05020 0.20 -0.6 267,579 + HMPREF1058_RS05020 0.25 -0.5 267,664 - HMPREF1058_RS05020 0.35 -1.4 267,672 - HMPREF1058_RS05020 0.36 -0.2 267,684 + HMPREF1058_RS05020 0.38 -0.6 267,738 + HMPREF1058_RS05020 0.44 +1.1 267,738 + HMPREF1058_RS05020 0.44 +0.1 267,739 - HMPREF1058_RS05020 0.44 -0.3 267,802 + HMPREF1058_RS05020 0.52 -0.6 267,838 + HMPREF1058_RS05020 0.56 -1.2 267,869 + HMPREF1058_RS05020 0.60 +0.7 267,997 - HMPREF1058_RS05020 0.75 -0.3 268,180 + +0.3 268,181 - -1.4 268,230 + +0.5 268,243 + HMPREF1058_RS05015 0.18 -1.7 268,243 + HMPREF1058_RS05015 0.18 -1.7 268,244 - HMPREF1058_RS05015 0.18 -2.1 268,367 - HMPREF1058_RS05015 0.78 +0.2 268,367 - HMPREF1058_RS05015 0.78 +0.7 268,421 - +0.7 268,421 - -1.8 268,679 - HMPREF1058_RS05010 0.24 -0.2 268,734 + HMPREF1058_RS05010 0.35 -0.6 268,758 + HMPREF1058_RS05010 0.39 -0.9 268,759 - HMPREF1058_RS05010 0.39 +1.7 268,760 + HMPREF1058_RS05010 0.40 -0.7 268,792 + HMPREF1058_RS05010 0.46 -0.7 268,793 - HMPREF1058_RS05010 0.46 -0.3 268,800 + HMPREF1058_RS05010 0.47 +1.3 268,801 - HMPREF1058_RS05010 0.48 -0.8 268,811 - HMPREF1058_RS05010 0.50 -1.6 268,842 + HMPREF1058_RS05010 0.56 -0.3 268,892 + HMPREF1058_RS05010 0.65 +0.5 268,896 + HMPREF1058_RS05010 0.66 -1.2 268,897 - HMPREF1058_RS05010 0.66 -0.8 268,897 - HMPREF1058_RS05010 0.66 -1.7 268,899 - HMPREF1058_RS05010 0.67 +0.0 268,906 + HMPREF1058_RS05010 0.68 -1.4 268,910 - +1.8 268,935 + HMPREF1058_RS05010 0.74 -1.2 268,935 + HMPREF1058_RS05010 0.74 +0.1 268,987 - HMPREF1058_RS05010 0.84 +0.7 269,072 - +0.7 269,072 - +2.5 269,072 - +1.2 269,086 + +0.4 269,087 - -2.1 269,087 - +2.6 269,099 + +0.5 269,112 + -0.7 269,169 + +1.0 269,294 + HMPREF1058_RS05005 0.19 +0.9
Or see this region's nucleotide sequence