Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04945 and HMPREF1058_RS04940 are separated by 145 nucleotides HMPREF1058_RS04940 and HMPREF1058_RS04935 are separated by 135 nucleotides
HMPREF1058_RS04945: HMPREF1058_RS04945 - hypothetical protein, at 285,909 to 287,006
_RS04945
HMPREF1058_RS04940: HMPREF1058_RS04940 - TetR/AcrR family transcriptional regulator, at 287,152 to 287,763
_RS04940
HMPREF1058_RS04935: HMPREF1058_RS04935 - site-specific integrase, at 287,899 to 288,999
_RS04935
Position (kb) 287
288 Strain fitness (log2 ratio) -2
-1
0
1
2 at 286.156 kb on - strand, within HMPREF1058_RS04945 at 286.156 kb on - strand, within HMPREF1058_RS04945 at 286.189 kb on - strand, within HMPREF1058_RS04945 at 286.225 kb on - strand, within HMPREF1058_RS04945 at 286.299 kb on + strand, within HMPREF1058_RS04945 at 286.441 kb on - strand, within HMPREF1058_RS04945 at 286.476 kb on + strand, within HMPREF1058_RS04945 at 286.477 kb on - strand, within HMPREF1058_RS04945 at 286.522 kb on - strand, within HMPREF1058_RS04945 at 286.626 kb on + strand, within HMPREF1058_RS04945 at 286.695 kb on + strand, within HMPREF1058_RS04945 at 286.737 kb on + strand, within HMPREF1058_RS04945 at 286.854 kb on + strand, within HMPREF1058_RS04945 at 287.005 kb on - strand at 287.005 kb on - strand at 287.152 kb on - strand at 287.279 kb on - strand, within HMPREF1058_RS04940 at 287.323 kb on + strand, within HMPREF1058_RS04940 at 287.403 kb on - strand, within HMPREF1058_RS04940 at 287.488 kb on + strand, within HMPREF1058_RS04940 at 287.511 kb on - strand, within HMPREF1058_RS04940 at 287.511 kb on - strand, within HMPREF1058_RS04940 at 287.518 kb on + strand, within HMPREF1058_RS04940 at 287.568 kb on - strand, within HMPREF1058_RS04940 at 287.568 kb on - strand, within HMPREF1058_RS04940 at 287.784 kb on + strand at 287.795 kb on + strand at 287.866 kb on + strand at 287.980 kb on + strand at 287.980 kb on + strand at 288.110 kb on - strand, within HMPREF1058_RS04935 at 288.113 kb on + strand, within HMPREF1058_RS04935 at 288.113 kb on + strand, within HMPREF1058_RS04935 at 288.119 kb on - strand, within HMPREF1058_RS04935 at 288.131 kb on - strand, within HMPREF1058_RS04935 at 288.264 kb on + strand, within HMPREF1058_RS04935 at 288.311 kb on - strand, within HMPREF1058_RS04935 at 288.448 kb on + strand, within HMPREF1058_RS04935 at 288.448 kb on + strand, within HMPREF1058_RS04935
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 286,156 - HMPREF1058_RS04945 0.22 +1.8 286,156 - HMPREF1058_RS04945 0.22 -1.3 286,189 - HMPREF1058_RS04945 0.26 -0.5 286,225 - HMPREF1058_RS04945 0.29 +1.4 286,299 + HMPREF1058_RS04945 0.36 -1.3 286,441 - HMPREF1058_RS04945 0.48 +0.6 286,476 + HMPREF1058_RS04945 0.52 +0.7 286,477 - HMPREF1058_RS04945 0.52 +0.5 286,522 - HMPREF1058_RS04945 0.56 -1.6 286,626 + HMPREF1058_RS04945 0.65 +1.8 286,695 + HMPREF1058_RS04945 0.72 -0.5 286,737 + HMPREF1058_RS04945 0.75 -0.2 286,854 + HMPREF1058_RS04945 0.86 -0.5 287,005 - -0.3 287,005 - +0.4 287,152 - -0.4 287,279 - HMPREF1058_RS04940 0.21 -0.5 287,323 + HMPREF1058_RS04940 0.28 +0.8 287,403 - HMPREF1058_RS04940 0.41 +1.3 287,488 + HMPREF1058_RS04940 0.55 -2.5 287,511 - HMPREF1058_RS04940 0.59 -1.9 287,511 - HMPREF1058_RS04940 0.59 +0.4 287,518 + HMPREF1058_RS04940 0.60 +1.3 287,568 - HMPREF1058_RS04940 0.68 +1.6 287,568 - HMPREF1058_RS04940 0.68 -1.3 287,784 + +0.8 287,795 + -0.4 287,866 + -1.8 287,980 + -0.7 287,980 + +1.3 288,110 - HMPREF1058_RS04935 0.19 +0.3 288,113 + HMPREF1058_RS04935 0.19 -0.5 288,113 + HMPREF1058_RS04935 0.19 +0.5 288,119 - HMPREF1058_RS04935 0.20 +1.1 288,131 - HMPREF1058_RS04935 0.21 -0.5 288,264 + HMPREF1058_RS04935 0.33 +1.4 288,311 - HMPREF1058_RS04935 0.37 -1.2 288,448 + HMPREF1058_RS04935 0.50 -1.3 288,448 + HMPREF1058_RS04935 0.50 -0.6
Or see this region's nucleotide sequence