Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04525 and HMPREF1058_RS04520 are separated by 667 nucleotides HMPREF1058_RS04520 and HMPREF1058_RS04515 are separated by 3 nucleotides HMPREF1058_RS04515 and HMPREF1058_RS20295 are separated by 121 nucleotides HMPREF1058_RS20295 and HMPREF1058_RS04510 are separated by 20 nucleotides
HMPREF1058_RS04525: HMPREF1058_RS04525 - hypothetical protein, at 11,750 to 12,043
_RS04525
HMPREF1058_RS04520: HMPREF1058_RS04520 - hypothetical protein, at 12,711 to 12,926
_RS04520
HMPREF1058_RS04515: HMPREF1058_RS04515 - hypothetical protein, at 12,930 to 13,127
_RS04515
HMPREF1058_RS20295: HMPREF1058_RS20295 - hypothetical protein, at 13,249 to 13,641
_RS20295
HMPREF1058_RS04510: HMPREF1058_RS04510 - hypothetical protein, at 13,662 to 14,102
_RS04510
Position (kb) 12
13 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 11.715 kb on + strand at 11.740 kb on + strand at 11.850 kb on + strand, within HMPREF1058_RS04525 at 11.874 kb on + strand, within HMPREF1058_RS04525 at 11.884 kb on + strand, within HMPREF1058_RS04525 at 11.884 kb on + strand, within HMPREF1058_RS04525 at 11.886 kb on + strand, within HMPREF1058_RS04525 at 11.886 kb on + strand, within HMPREF1058_RS04525 at 12.000 kb on + strand, within HMPREF1058_RS04525 at 12.191 kb on + strand at 12.238 kb on + strand at 12.331 kb on + strand at 12.553 kb on + strand at 12.573 kb on + strand at 12.573 kb on + strand at 12.676 kb on + strand at 12.712 kb on + strand at 12.814 kb on + strand, within HMPREF1058_RS04520 at 12.931 kb on + strand at 12.931 kb on + strand at 13.009 kb on + strand, within HMPREF1058_RS04515 at 13.020 kb on + strand, within HMPREF1058_RS04515 at 13.130 kb on + strand at 13.455 kb on + strand, within HMPREF1058_RS20295 at 13.455 kb on + strand, within HMPREF1058_RS20295 at 13.465 kb on + strand, within HMPREF1058_RS20295 at 13.466 kb on - strand, within HMPREF1058_RS20295 at 13.646 kb on + strand at 13.651 kb on - strand at 13.674 kb on - strand at 13.674 kb on - strand at 13.746 kb on - strand, within HMPREF1058_RS04510 at 13.746 kb on - strand, within HMPREF1058_RS04510 at 13.877 kb on + strand, within HMPREF1058_RS04510 at 13.879 kb on + strand, within HMPREF1058_RS04510 at 13.879 kb on + strand, within HMPREF1058_RS04510 at 13.880 kb on - strand, within HMPREF1058_RS04510
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 11,715 + -0.1 11,740 + +1.4 11,850 + HMPREF1058_RS04525 0.34 -1.0 11,874 + HMPREF1058_RS04525 0.42 +1.2 11,884 + HMPREF1058_RS04525 0.46 +0.2 11,884 + HMPREF1058_RS04525 0.46 +0.3 11,886 + HMPREF1058_RS04525 0.46 +0.8 11,886 + HMPREF1058_RS04525 0.46 +0.4 12,000 + HMPREF1058_RS04525 0.85 -2.0 12,191 + +0.5 12,238 + -1.2 12,331 + +0.8 12,553 + -0.4 12,573 + -0.7 12,573 + +0.9 12,676 + -2.0 12,712 + +1.3 12,814 + HMPREF1058_RS04520 0.48 -2.7 12,931 + +1.9 12,931 + +1.8 13,009 + HMPREF1058_RS04515 0.40 -0.1 13,020 + HMPREF1058_RS04515 0.45 -1.5 13,130 + +0.5 13,455 + HMPREF1058_RS20295 0.52 -0.2 13,455 + HMPREF1058_RS20295 0.52 -2.2 13,465 + HMPREF1058_RS20295 0.55 +3.2 13,466 - HMPREF1058_RS20295 0.55 -2.9 13,646 + -0.2 13,651 - -0.6 13,674 - +0.4 13,674 - +0.5 13,746 - HMPREF1058_RS04510 0.19 -1.1 13,746 - HMPREF1058_RS04510 0.19 +0.5 13,877 + HMPREF1058_RS04510 0.49 +0.7 13,879 + HMPREF1058_RS04510 0.49 -0.4 13,879 + HMPREF1058_RS04510 0.49 -0.8 13,880 - HMPREF1058_RS04510 0.49 -1.6
Or see this region's nucleotide sequence