Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04445

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
33,794	+		HMPREF1058_RS04445	0.21	-2.2
33,794	+		HMPREF1058_RS04445	0.21	+0.9
34,128	+				-0.0
34,129	-				+0.5
34,194	+				+1.4
34,194	+				+0.3
34,195	-				-2.3
34,226	+				+0.1
34,271	-				-1.5
34,300	-				-0.1
34,317	-		HMPREF1058_RS21525	0.10	-0.5
34,350	+		HMPREF1058_RS21525	0.24	+0.2
34,370	-		HMPREF1058_RS21525	0.33	-0.3
34,403	-		HMPREF1058_RS21525	0.46	-1.7
34,474	+		HMPREF1058_RS21525	0.76	-0.5
34,483	+		HMPREF1058_RS21525	0.80	+2.2
34,594	-				+1.2
34,682	+				-1.5
34,694	-				+1.2
34,718	-				-1.3
34,802	-				-0.2
34,807	+				-1.6
34,807	+				+1.2
34,808	-				+1.1
34,852	+				-0.0
34,910	-				+2.4
34,913	+				-0.1
34,914	-				+0.7
34,914	-				-0.7
34,940	+				-0.3
34,941	-				+0.8
34,951	+				-0.9
34,951	+				-0.6
34,968	+				-1.3