Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03935 and HMPREF1058_RS03930 are separated by 58 nucleotides HMPREF1058_RS03930 and HMPREF1058_RS03925 are separated by 8 nucleotides HMPREF1058_RS03925 and HMPREF1058_RS03920 are separated by 82 nucleotides
HMPREF1058_RS03935: HMPREF1058_RS03935 - hypothetical protein, at 155,275 to 155,553
_RS03935
HMPREF1058_RS03930: HMPREF1058_RS03930 - ABC transporter permease, at 155,612 to 156,409
_RS03930
HMPREF1058_RS03925: HMPREF1058_RS03925 - ATP-binding cassette domain-containing protein, at 156,418 to 157,038
_RS03925
HMPREF1058_RS03920: HMPREF1058_RS03920 - proline--tRNA ligase, at 157,121 to 158,611
_RS03920
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2 at 155.419 kb on + strand, within HMPREF1058_RS03935 at 155.428 kb on + strand, within HMPREF1058_RS03935 at 155.443 kb on - strand, within HMPREF1058_RS03935 at 155.452 kb on - strand, within HMPREF1058_RS03935 at 155.454 kb on + strand, within HMPREF1058_RS03935 at 155.455 kb on - strand, within HMPREF1058_RS03935 at 155.480 kb on + strand, within HMPREF1058_RS03935 at 155.485 kb on + strand, within HMPREF1058_RS03935 at 155.486 kb on - strand, within HMPREF1058_RS03935 at 155.486 kb on - strand, within HMPREF1058_RS03935 at 155.488 kb on - strand, within HMPREF1058_RS03935 at 155.529 kb on + strand at 155.531 kb on + strand at 155.532 kb on - strand at 155.561 kb on + strand at 155.578 kb on + strand at 155.583 kb on - strand at 155.613 kb on + strand at 155.729 kb on - strand, within HMPREF1058_RS03930 at 155.798 kb on - strand, within HMPREF1058_RS03930 at 155.965 kb on - strand, within HMPREF1058_RS03930 at 155.965 kb on - strand, within HMPREF1058_RS03930 at 155.973 kb on - strand, within HMPREF1058_RS03930 at 155.998 kb on + strand, within HMPREF1058_RS03930 at 156.013 kb on + strand, within HMPREF1058_RS03930 at 156.252 kb on + strand, within HMPREF1058_RS03930 at 156.277 kb on + strand, within HMPREF1058_RS03930 at 156.278 kb on - strand, within HMPREF1058_RS03930 at 156.284 kb on - strand, within HMPREF1058_RS03930 at 156.284 kb on - strand, within HMPREF1058_RS03930 at 156.352 kb on + strand at 156.393 kb on - strand at 156.427 kb on - strand at 156.837 kb on + strand, within HMPREF1058_RS03925 at 156.865 kb on + strand, within HMPREF1058_RS03925 at 156.887 kb on - strand, within HMPREF1058_RS03925 at 156.945 kb on + strand, within HMPREF1058_RS03925 at 156.946 kb on - strand, within HMPREF1058_RS03925 at 157.018 kb on + strand at 157.020 kb on + strand at 157.043 kb on + strand at 157.089 kb on - strand at 157.089 kb on - strand at 157.089 kb on - strand at 157.106 kb on + strand at 157.122 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 155,419 + HMPREF1058_RS03935 0.52 -1.5 155,428 + HMPREF1058_RS03935 0.55 +1.4 155,443 - HMPREF1058_RS03935 0.60 +0.1 155,452 - HMPREF1058_RS03935 0.63 -1.6 155,454 + HMPREF1058_RS03935 0.64 +0.5 155,455 - HMPREF1058_RS03935 0.65 -0.0 155,480 + HMPREF1058_RS03935 0.73 -0.8 155,485 + HMPREF1058_RS03935 0.75 -1.6 155,486 - HMPREF1058_RS03935 0.76 -0.7 155,486 - HMPREF1058_RS03935 0.76 -0.4 155,488 - HMPREF1058_RS03935 0.76 -1.2 155,529 + +1.2 155,531 + +1.9 155,532 - -0.8 155,561 + +1.0 155,578 + -0.5 155,583 - -1.9 155,613 + +0.2 155,729 - HMPREF1058_RS03930 0.15 -0.2 155,798 - HMPREF1058_RS03930 0.23 +0.3 155,965 - HMPREF1058_RS03930 0.44 -0.1 155,965 - HMPREF1058_RS03930 0.44 -0.2 155,973 - HMPREF1058_RS03930 0.45 +1.3 155,998 + HMPREF1058_RS03930 0.48 -1.7 156,013 + HMPREF1058_RS03930 0.50 +0.2 156,252 + HMPREF1058_RS03930 0.80 -0.3 156,277 + HMPREF1058_RS03930 0.83 +0.9 156,278 - HMPREF1058_RS03930 0.83 -0.4 156,284 - HMPREF1058_RS03930 0.84 +0.4 156,284 - HMPREF1058_RS03930 0.84 -1.7 156,352 + +1.7 156,393 - -0.1 156,427 - -0.5 156,837 + HMPREF1058_RS03925 0.67 -1.8 156,865 + HMPREF1058_RS03925 0.72 +0.2 156,887 - HMPREF1058_RS03925 0.76 +0.3 156,945 + HMPREF1058_RS03925 0.85 -2.2 156,946 - HMPREF1058_RS03925 0.85 -1.4 157,018 + -1.0 157,020 + -1.6 157,043 + -1.7 157,089 - -1.0 157,089 - -2.4 157,089 - +0.2 157,106 + +0.3 157,122 + -2.0
Or see this region's nucleotide sequence