Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03845

Experiment: Lacto-N-tetraose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03850 and HMPREF1058_RS03845 are separated by 12 nucleotidesHMPREF1058_RS03845 and HMPREF1058_RS03840 are separated by 96 nucleotidesHMPREF1058_RS03840 and HMPREF1058_RS03835 are separated by 151 nucleotides HMPREF1058_RS03850: HMPREF1058_RS03850 - ABC transporter permease, at 172,366 to 173,472 _RS03850 HMPREF1058_RS03845: HMPREF1058_RS03845 - ABC transporter permease, at 173,485 to 174,591 _RS03845 HMPREF1058_RS03840: HMPREF1058_RS03840 - fructose-6-phosphate aldolase, at 174,688 to 175,344 _RS03840 HMPREF1058_RS03835: HMPREF1058_RS03835 - AraC family transcriptional regulator, at 175,496 to 176,419 _RS03835 Position (kb) 173 174 175Strain fitness (log2 ratio) -2 -1 0 1 2at 172.506 kb on - strand, within HMPREF1058_RS03850at 172.598 kb on + strand, within HMPREF1058_RS03850at 172.599 kb on - strand, within HMPREF1058_RS03850at 172.599 kb on - strand, within HMPREF1058_RS03850at 172.603 kb on + strand, within HMPREF1058_RS03850at 172.603 kb on + strand, within HMPREF1058_RS03850at 172.604 kb on - strand, within HMPREF1058_RS03850at 172.620 kb on - strand, within HMPREF1058_RS03850at 172.765 kb on + strand, within HMPREF1058_RS03850at 172.765 kb on + strand, within HMPREF1058_RS03850at 172.766 kb on - strand, within HMPREF1058_RS03850at 172.780 kb on - strand, within HMPREF1058_RS03850at 173.021 kb on + strand, within HMPREF1058_RS03850at 173.034 kb on - strand, within HMPREF1058_RS03850at 173.038 kb on + strand, within HMPREF1058_RS03850at 173.039 kb on - strand, within HMPREF1058_RS03850at 173.039 kb on - strand, within HMPREF1058_RS03850at 173.039 kb on - strand, within HMPREF1058_RS03850at 173.039 kb on - strand, within HMPREF1058_RS03850at 173.039 kb on - strand, within HMPREF1058_RS03850at 173.094 kb on - strand, within HMPREF1058_RS03850at 173.096 kb on + strand, within HMPREF1058_RS03850at 173.335 kb on + strand, within HMPREF1058_RS03850at 173.406 kb on - strandat 173.406 kb on - strandat 173.409 kb on + strandat 173.409 kb on + strandat 173.494 kb on + strandat 173.495 kb on - strandat 173.495 kb on - strandat 173.498 kb on + strandat 173.571 kb on + strandat 173.705 kb on + strand, within HMPREF1058_RS03845at 173.705 kb on + strand, within HMPREF1058_RS03845at 173.706 kb on - strand, within HMPREF1058_RS03845at 173.723 kb on - strand, within HMPREF1058_RS03845at 173.723 kb on - strand, within HMPREF1058_RS03845at 173.878 kb on + strand, within HMPREF1058_RS03845at 173.889 kb on + strand, within HMPREF1058_RS03845at 173.890 kb on - strand, within HMPREF1058_RS03845at 173.957 kb on + strand, within HMPREF1058_RS03845at 174.000 kb on + strand, within HMPREF1058_RS03845at 174.001 kb on - strand, within HMPREF1058_RS03845at 174.006 kb on - strand, within HMPREF1058_RS03845at 174.006 kb on - strand, within HMPREF1058_RS03845at 174.006 kb on - strand, within HMPREF1058_RS03845at 174.010 kb on - strand, within HMPREF1058_RS03845at 174.316 kb on + strand, within HMPREF1058_RS03845at 174.408 kb on + strand, within HMPREF1058_RS03845at 174.481 kb on + strandat 174.537 kb on + strandat 174.631 kb on - strandat 174.762 kb on - strand, within HMPREF1058_RS03840at 174.765 kb on + strand, within HMPREF1058_RS03840at 174.765 kb on + strand, within HMPREF1058_RS03840at 174.766 kb on - strand, within HMPREF1058_RS03840at 174.819 kb on + strand, within HMPREF1058_RS03840at 174.820 kb on - strand, within HMPREF1058_RS03840at 174.827 kb on - strand, within HMPREF1058_RS03840at 174.836 kb on + strand, within HMPREF1058_RS03840at 174.837 kb on - strand, within HMPREF1058_RS03840at 174.841 kb on - strand, within HMPREF1058_RS03840at 174.841 kb on - strand, within HMPREF1058_RS03840at 175.046 kb on + strand, within HMPREF1058_RS03840at 175.047 kb on - strand, within HMPREF1058_RS03840at 175.072 kb on + strand, within HMPREF1058_RS03840at 175.072 kb on + strand, within HMPREF1058_RS03840at 175.073 kb on - strand, within HMPREF1058_RS03840at 175.073 kb on - strand, within HMPREF1058_RS03840at 175.150 kb on + strand, within HMPREF1058_RS03840at 175.150 kb on + strand, within HMPREF1058_RS03840at 175.166 kb on - strand, within HMPREF1058_RS03840at 175.205 kb on + strand, within HMPREF1058_RS03840at 175.206 kb on - strand, within HMPREF1058_RS03840at 175.206 kb on - strand, within HMPREF1058_RS03840at 175.206 kb on - strand, within HMPREF1058_RS03840at 175.209 kb on + strand, within HMPREF1058_RS03840at 175.209 kb on + strand, within HMPREF1058_RS03840at 175.211 kb on + strand, within HMPREF1058_RS03840at 175.214 kb on + strand, within HMPREF1058_RS03840at 175.214 kb on + strand, within HMPREF1058_RS03840at 175.215 kb on - strand, within HMPREF1058_RS03840at 175.215 kb on - strand, within HMPREF1058_RS03840at 175.242 kb on - strand, within HMPREF1058_RS03840at 175.278 kb on - strand, within HMPREF1058_RS03840at 175.296 kb on + strandat 175.304 kb on + strandat 175.424 kb on + strandat 175.576 kb on + strandat 175.583 kb on - strandat 175.585 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C)
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172,506 - HMPREF1058_RS03850 0.13 +1.4
172,598 + HMPREF1058_RS03850 0.21 -0.6
172,599 - HMPREF1058_RS03850 0.21 +0.2
172,599 - HMPREF1058_RS03850 0.21 -1.2
172,603 + HMPREF1058_RS03850 0.21 +1.1
172,603 + HMPREF1058_RS03850 0.21 -1.4
172,604 - HMPREF1058_RS03850 0.21 +1.2
172,620 - HMPREF1058_RS03850 0.23 +0.4
172,765 + HMPREF1058_RS03850 0.36 +0.9
172,765 + HMPREF1058_RS03850 0.36 -0.2
172,766 - HMPREF1058_RS03850 0.36 -1.3
172,780 - HMPREF1058_RS03850 0.37 -0.5
173,021 + HMPREF1058_RS03850 0.59 +1.0
173,034 - HMPREF1058_RS03850 0.60 -0.0
173,038 + HMPREF1058_RS03850 0.61 -0.1
173,039 - HMPREF1058_RS03850 0.61 +0.8
173,039 - HMPREF1058_RS03850 0.61 -0.6
173,039 - HMPREF1058_RS03850 0.61 +0.7
173,039 - HMPREF1058_RS03850 0.61 -1.6
173,039 - HMPREF1058_RS03850 0.61 -2.7
173,094 - HMPREF1058_RS03850 0.66 -0.5
173,096 + HMPREF1058_RS03850 0.66 -1.4
173,335 + HMPREF1058_RS03850 0.88 -0.9
173,406 - +0.6
173,406 - +0.5
173,409 + +0.8
173,409 + -0.9
173,494 + -0.8
173,495 - +0.3
173,495 - +0.7
173,498 + -0.8
173,571 + +0.1
173,705 + HMPREF1058_RS03845 0.20 -0.4
173,705 + HMPREF1058_RS03845 0.20 -1.0
173,706 - HMPREF1058_RS03845 0.20 -1.3
173,723 - HMPREF1058_RS03845 0.21 +0.6
173,723 - HMPREF1058_RS03845 0.21 +0.2
173,878 + HMPREF1058_RS03845 0.36 -0.5
173,889 + HMPREF1058_RS03845 0.36 -0.1
173,890 - HMPREF1058_RS03845 0.37 -0.4
173,957 + HMPREF1058_RS03845 0.43 -1.5
174,000 + HMPREF1058_RS03845 0.47 -0.3
174,001 - HMPREF1058_RS03845 0.47 -0.8
174,006 - HMPREF1058_RS03845 0.47 -1.9
174,006 - HMPREF1058_RS03845 0.47 -1.0
174,006 - HMPREF1058_RS03845 0.47 +0.5
174,010 - HMPREF1058_RS03845 0.47 +0.3
174,316 + HMPREF1058_RS03845 0.75 +1.0
174,408 + HMPREF1058_RS03845 0.83 +0.2
174,481 + -1.3
174,537 + -1.1
174,631 - -0.1
174,762 - HMPREF1058_RS03840 0.11 +1.2
174,765 + HMPREF1058_RS03840 0.12 -0.0
174,765 + HMPREF1058_RS03840 0.12 -1.0
174,766 - HMPREF1058_RS03840 0.12 -1.8
174,819 + HMPREF1058_RS03840 0.20 +2.2
174,820 - HMPREF1058_RS03840 0.20 +2.7
174,827 - HMPREF1058_RS03840 0.21 -0.0
174,836 + HMPREF1058_RS03840 0.23 -0.0
174,837 - HMPREF1058_RS03840 0.23 +0.1
174,841 - HMPREF1058_RS03840 0.23 +0.4
174,841 - HMPREF1058_RS03840 0.23 +0.7
175,046 + HMPREF1058_RS03840 0.54 -0.6
175,047 - HMPREF1058_RS03840 0.55 -0.5
175,072 + HMPREF1058_RS03840 0.58 +1.4
175,072 + HMPREF1058_RS03840 0.58 -0.6
175,073 - HMPREF1058_RS03840 0.59 -1.3
175,073 - HMPREF1058_RS03840 0.59 -1.1
175,150 + HMPREF1058_RS03840 0.70 +0.9
175,150 + HMPREF1058_RS03840 0.70 -1.3
175,166 - HMPREF1058_RS03840 0.73 -0.5
175,205 + HMPREF1058_RS03840 0.79 -1.7
175,206 - HMPREF1058_RS03840 0.79 +1.5
175,206 - HMPREF1058_RS03840 0.79 -0.7
175,206 - HMPREF1058_RS03840 0.79 +2.2
175,209 + HMPREF1058_RS03840 0.79 +0.3
175,209 + HMPREF1058_RS03840 0.79 -1.5
175,211 + HMPREF1058_RS03840 0.80 -0.6
175,214 + HMPREF1058_RS03840 0.80 +1.7
175,214 + HMPREF1058_RS03840 0.80 -0.0
175,215 - HMPREF1058_RS03840 0.80 +1.7
175,215 - HMPREF1058_RS03840 0.80 +1.3
175,242 - HMPREF1058_RS03840 0.84 -2.3
175,278 - HMPREF1058_RS03840 0.90 +2.0
175,296 + -0.3
175,304 + -2.0
175,424 + -1.1
175,576 + +0.5
175,583 - -1.1
175,585 + +0.5

Or see this region's nucleotide sequence