Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03280 and HMPREF1058_RS03275 are separated by 21 nucleotides HMPREF1058_RS03275 and HMPREF1058_RS03270 overlap by 1 nucleotides HMPREF1058_RS03270 and HMPREF1058_RS03265 are separated by 85 nucleotides
HMPREF1058_RS03280: HMPREF1058_RS03280 - phosphomethylpyrimidine synthase ThiC, at 315,240 to 316,940
_RS03280
HMPREF1058_RS03275: HMPREF1058_RS03275 - hypothetical protein, at 316,962 to 317,477
_RS03275
HMPREF1058_RS03270: HMPREF1058_RS03270 - flavodoxin family protein, at 317,477 to 318,049
_RS03270
HMPREF1058_RS03265: HMPREF1058_RS03265 - 2-iminoacetate synthase ThiH, at 318,135 to 319,265
_RS03265
Position (kb) 317
318
319 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 316.626 kb on + strand, within HMPREF1058_RS03280 at 316.626 kb on + strand, within HMPREF1058_RS03280 at 316.627 kb on - strand, within HMPREF1058_RS03280 at 316.627 kb on - strand, within HMPREF1058_RS03280 at 316.672 kb on + strand, within HMPREF1058_RS03280 at 316.673 kb on - strand, within HMPREF1058_RS03280 at 316.673 kb on - strand, within HMPREF1058_RS03280 at 316.673 kb on - strand, within HMPREF1058_RS03280 at 316.673 kb on - strand, within HMPREF1058_RS03280 at 316.679 kb on - strand, within HMPREF1058_RS03280 at 316.762 kb on + strand, within HMPREF1058_RS03280 at 316.870 kb on - strand at 317.011 kb on + strand at 317.012 kb on - strand at 317.020 kb on + strand, within HMPREF1058_RS03275 at 317.021 kb on - strand, within HMPREF1058_RS03275 at 317.350 kb on - strand, within HMPREF1058_RS03275 at 317.421 kb on + strand, within HMPREF1058_RS03275 at 317.425 kb on - strand, within HMPREF1058_RS03275 at 317.476 kb on - strand at 317.484 kb on + strand at 317.601 kb on - strand, within HMPREF1058_RS03270 at 317.694 kb on + strand, within HMPREF1058_RS03270 at 317.764 kb on - strand, within HMPREF1058_RS03270 at 317.884 kb on + strand, within HMPREF1058_RS03270 at 317.914 kb on - strand, within HMPREF1058_RS03270 at 318.033 kb on + strand at 318.084 kb on + strand at 318.094 kb on + strand at 318.095 kb on - strand at 318.119 kb on + strand at 318.367 kb on - strand, within HMPREF1058_RS03265 at 318.367 kb on - strand, within HMPREF1058_RS03265 at 318.368 kb on + strand, within HMPREF1058_RS03265 at 318.399 kb on + strand, within HMPREF1058_RS03265 at 318.434 kb on + strand, within HMPREF1058_RS03265 at 318.469 kb on - strand, within HMPREF1058_RS03265 at 318.550 kb on - strand, within HMPREF1058_RS03265 at 318.601 kb on + strand, within HMPREF1058_RS03265 at 318.607 kb on + strand, within HMPREF1058_RS03265 at 318.631 kb on - strand, within HMPREF1058_RS03265 at 318.685 kb on - strand, within HMPREF1058_RS03265 at 318.701 kb on + strand, within HMPREF1058_RS03265 at 318.702 kb on - strand, within HMPREF1058_RS03265 at 318.706 kb on + strand, within HMPREF1058_RS03265 at 318.706 kb on + strand, within HMPREF1058_RS03265 at 318.707 kb on - strand, within HMPREF1058_RS03265 at 318.707 kb on - strand, within HMPREF1058_RS03265 at 318.708 kb on + strand, within HMPREF1058_RS03265 at 318.802 kb on + strand, within HMPREF1058_RS03265 at 318.802 kb on + strand, within HMPREF1058_RS03265 at 318.856 kb on + strand, within HMPREF1058_RS03265 at 318.892 kb on - strand, within HMPREF1058_RS03265 at 318.892 kb on - strand, within HMPREF1058_RS03265 at 319.012 kb on + strand, within HMPREF1058_RS03265 at 319.016 kb on + strand, within HMPREF1058_RS03265 at 319.023 kb on + strand, within HMPREF1058_RS03265
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 316,626 + HMPREF1058_RS03280 0.81 +1.2 316,626 + HMPREF1058_RS03280 0.81 -1.9 316,627 - HMPREF1058_RS03280 0.82 -1.0 316,627 - HMPREF1058_RS03280 0.82 -1.2 316,672 + HMPREF1058_RS03280 0.84 +0.7 316,673 - HMPREF1058_RS03280 0.84 -0.7 316,673 - HMPREF1058_RS03280 0.84 +3.2 316,673 - HMPREF1058_RS03280 0.84 -0.4 316,673 - HMPREF1058_RS03280 0.84 -0.2 316,679 - HMPREF1058_RS03280 0.85 +0.8 316,762 + HMPREF1058_RS03280 0.89 +0.6 316,870 - -1.6 317,011 + +0.8 317,012 - -0.1 317,020 + HMPREF1058_RS03275 0.11 +0.4 317,021 - HMPREF1058_RS03275 0.11 +1.0 317,350 - HMPREF1058_RS03275 0.75 +0.2 317,421 + HMPREF1058_RS03275 0.89 -2.1 317,425 - HMPREF1058_RS03275 0.90 -0.5 317,476 - +1.1 317,484 + -0.3 317,601 - HMPREF1058_RS03270 0.22 -1.3 317,694 + HMPREF1058_RS03270 0.38 -2.2 317,764 - HMPREF1058_RS03270 0.50 -0.1 317,884 + HMPREF1058_RS03270 0.71 +0.8 317,914 - HMPREF1058_RS03270 0.76 -1.0 318,033 + +0.7 318,084 + -3.5 318,094 + -2.4 318,095 - +1.2 318,119 + +1.2 318,367 - HMPREF1058_RS03265 0.21 -1.2 318,367 - HMPREF1058_RS03265 0.21 -2.6 318,368 + HMPREF1058_RS03265 0.21 -1.5 318,399 + HMPREF1058_RS03265 0.23 +2.4 318,434 + HMPREF1058_RS03265 0.26 +0.2 318,469 - HMPREF1058_RS03265 0.30 -1.0 318,550 - HMPREF1058_RS03265 0.37 +0.2 318,601 + HMPREF1058_RS03265 0.41 +1.1 318,607 + HMPREF1058_RS03265 0.42 -0.7 318,631 - HMPREF1058_RS03265 0.44 -0.8 318,685 - HMPREF1058_RS03265 0.49 -1.0 318,701 + HMPREF1058_RS03265 0.50 +0.8 318,702 - HMPREF1058_RS03265 0.50 +0.4 318,706 + HMPREF1058_RS03265 0.50 +0.3 318,706 + HMPREF1058_RS03265 0.50 -2.0 318,707 - HMPREF1058_RS03265 0.51 -2.8 318,707 - HMPREF1058_RS03265 0.51 -1.5 318,708 + HMPREF1058_RS03265 0.51 -1.6 318,802 + HMPREF1058_RS03265 0.59 -1.4 318,802 + HMPREF1058_RS03265 0.59 -2.9 318,856 + HMPREF1058_RS03265 0.64 +3.2 318,892 - HMPREF1058_RS03265 0.67 -1.2 318,892 - HMPREF1058_RS03265 0.67 +1.7 319,012 + HMPREF1058_RS03265 0.78 -1.1 319,016 + HMPREF1058_RS03265 0.78 -1.7 319,023 + HMPREF1058_RS03265 0.79 -2.1
Or see this region's nucleotide sequence