Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03140 and HMPREF1058_RS03135 are separated by 78 nucleotides HMPREF1058_RS03135 and HMPREF1058_RS03130 are separated by 576 nucleotides
HMPREF1058_RS03140: HMPREF1058_RS03140 - 23S ribosomal RNA, at 1,985 to 4,872
_RS03140
HMPREF1058_RS03135: HMPREF1058_RS03135 - 5S ribosomal RNA, at 4,951 to 5,061
_RS03135
HMPREF1058_RS03130: HMPREF1058_RS03130 - DUF177 domain-containing protein, at 5,638 to 6,171
_RS03130
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4.850 kb on + strand at 4.962 kb on + strand, within HMPREF1058_RS03135 at 4.962 kb on + strand, within HMPREF1058_RS03135 at 5.004 kb on + strand, within HMPREF1058_RS03135 at 5.290 kb on - strand at 5.290 kb on - strand at 5.363 kb on + strand at 5.366 kb on + strand at 5.366 kb on + strand at 5.367 kb on - strand at 5.414 kb on - strand at 5.429 kb on - strand at 5.485 kb on - strand at 5.550 kb on + strand at 5.589 kb on + strand at 5.589 kb on + strand at 5.617 kb on + strand at 5.617 kb on + strand at 5.617 kb on + strand at 5.619 kb on + strand at 5.659 kb on + strand at 5.900 kb on + strand, within HMPREF1058_RS03130 at 5.906 kb on + strand, within HMPREF1058_RS03130 at 5.906 kb on + strand, within HMPREF1058_RS03130 at 5.950 kb on + strand, within HMPREF1058_RS03130 at 5.970 kb on + strand, within HMPREF1058_RS03130
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 4,850 + +2.8 4,962 + HMPREF1058_RS03135 0.10 -0.2 4,962 + HMPREF1058_RS03135 0.10 +0.2 5,004 + HMPREF1058_RS03135 0.48 +0.4 5,290 - -1.2 5,290 - -0.1 5,363 + -0.8 5,366 + -0.5 5,366 + +0.3 5,367 - +3.6 5,414 - +1.0 5,429 - -2.6 5,485 - -0.5 5,550 + -0.7 5,589 + +0.3 5,589 + -0.1 5,617 + -0.7 5,617 + +0.1 5,617 + -0.4 5,619 + -0.5 5,659 + +0.1 5,900 + HMPREF1058_RS03130 0.49 +0.5 5,906 + HMPREF1058_RS03130 0.50 +0.1 5,906 + HMPREF1058_RS03130 0.50 -0.4 5,950 + HMPREF1058_RS03130 0.58 +2.3 5,970 + HMPREF1058_RS03130 0.62 +0.1
Or see this region's nucleotide sequence