Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02810 and HMPREF1058_RS02805 are separated by 338 nucleotides HMPREF1058_RS02805 and HMPREF1058_RS02800 are separated by 231 nucleotides HMPREF1058_RS02800 and HMPREF1058_RS02795 are separated by 31 nucleotides HMPREF1058_RS02795 and HMPREF1058_RS02790 are separated by 1 nucleotides
HMPREF1058_RS02810: HMPREF1058_RS02810 - RNA polymerase sigma-70 factor, at 89,640 to 90,230
_RS02810
HMPREF1058_RS02805: HMPREF1058_RS02805 - tRNA-Met, at 90,569 to 90,641
_RS02805
HMPREF1058_RS02800: HMPREF1058_RS02800 - TetR/AcrR family transcriptional regulator, at 90,873 to 91,472
_RS02800
HMPREF1058_RS02795: HMPREF1058_RS02795 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 91,504 to 92,250
_RS02795
HMPREF1058_RS02790: HMPREF1058_RS02790 - RNA pseudouridine synthase, at 92,252 to 92,923
_RS02790
Position (kb) 90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 90.026 kb on - strand, within HMPREF1058_RS02810 at 90.026 kb on - strand, within HMPREF1058_RS02810 at 90.076 kb on + strand, within HMPREF1058_RS02810 at 90.092 kb on + strand, within HMPREF1058_RS02810 at 90.093 kb on - strand at 90.099 kb on - strand, within HMPREF1058_RS02810 at 90.114 kb on + strand, within HMPREF1058_RS02810 at 90.127 kb on + strand, within HMPREF1058_RS02810 at 90.127 kb on + strand, within HMPREF1058_RS02810 at 90.189 kb on - strand at 90.202 kb on + strand at 90.203 kb on - strand at 90.267 kb on - strand at 90.348 kb on - strand at 90.354 kb on - strand at 90.354 kb on - strand at 90.370 kb on + strand at 90.467 kb on - strand at 90.487 kb on + strand at 90.753 kb on + strand at 90.797 kb on - strand at 90.816 kb on + strand at 90.847 kb on + strand at 90.849 kb on + strand at 90.870 kb on + strand at 90.962 kb on + strand, within HMPREF1058_RS02800 at 90.999 kb on + strand, within HMPREF1058_RS02800 at 91.001 kb on + strand, within HMPREF1058_RS02800 at 91.001 kb on + strand, within HMPREF1058_RS02800 at 91.001 kb on + strand, within HMPREF1058_RS02800 at 91.029 kb on + strand, within HMPREF1058_RS02800 at 91.202 kb on + strand, within HMPREF1058_RS02800 at 91.202 kb on + strand, within HMPREF1058_RS02800 at 91.202 kb on + strand, within HMPREF1058_RS02800 at 91.202 kb on + strand, within HMPREF1058_RS02800 at 91.204 kb on + strand, within HMPREF1058_RS02800 at 91.338 kb on + strand, within HMPREF1058_RS02800 at 91.338 kb on + strand, within HMPREF1058_RS02800 at 91.365 kb on + strand, within HMPREF1058_RS02800 at 91.365 kb on + strand, within HMPREF1058_RS02800 at 91.369 kb on + strand, within HMPREF1058_RS02800 at 91.416 kb on + strand at 92.248 kb on + strand at 92.248 kb on + strand at 92.248 kb on + strand at 92.251 kb on + strand at 92.256 kb on + strand at 92.256 kb on + strand at 92.256 kb on + strand at 92.257 kb on - strand at 92.257 kb on - strand at 92.264 kb on + strand at 92.279 kb on - strand at 92.378 kb on + strand, within HMPREF1058_RS02790 at 92.378 kb on + strand, within HMPREF1058_RS02790 at 92.378 kb on + strand, within HMPREF1058_RS02790 at 92.379 kb on - strand, within HMPREF1058_RS02790 at 92.379 kb on - strand, within HMPREF1058_RS02790
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 90,026 - HMPREF1058_RS02810 0.65 -0.8 90,026 - HMPREF1058_RS02810 0.65 -0.8 90,076 + HMPREF1058_RS02810 0.74 -2.3 90,092 + HMPREF1058_RS02810 0.76 +0.2 90,093 - +2.4 90,099 - HMPREF1058_RS02810 0.78 -1.5 90,114 + HMPREF1058_RS02810 0.80 -1.3 90,127 + HMPREF1058_RS02810 0.82 +0.8 90,127 + HMPREF1058_RS02810 0.82 +3.4 90,189 - -0.6 90,202 + +0.5 90,203 - +1.2 90,267 - -2.6 90,348 - -0.5 90,354 - +1.5 90,354 - -0.4 90,370 + -0.6 90,467 - -0.6 90,487 + -0.1 90,753 + +1.2 90,797 - -0.1 90,816 + -1.3 90,847 + -1.2 90,849 + -1.7 90,870 + -0.8 90,962 + HMPREF1058_RS02800 0.15 +2.8 90,999 + HMPREF1058_RS02800 0.21 -0.6 91,001 + HMPREF1058_RS02800 0.21 -1.4 91,001 + HMPREF1058_RS02800 0.21 -3.3 91,001 + HMPREF1058_RS02800 0.21 -1.9 91,029 + HMPREF1058_RS02800 0.26 +0.3 91,202 + HMPREF1058_RS02800 0.55 -2.0 91,202 + HMPREF1058_RS02800 0.55 -0.2 91,202 + HMPREF1058_RS02800 0.55 -2.0 91,202 + HMPREF1058_RS02800 0.55 -1.6 91,204 + HMPREF1058_RS02800 0.55 -1.9 91,338 + HMPREF1058_RS02800 0.78 -0.5 91,338 + HMPREF1058_RS02800 0.78 -2.4 91,365 + HMPREF1058_RS02800 0.82 -0.0 91,365 + HMPREF1058_RS02800 0.82 -1.3 91,369 + HMPREF1058_RS02800 0.83 -0.2 91,416 + -1.7 92,248 + -0.0 92,248 + -0.9 92,248 + -1.0 92,251 + -1.6 92,256 + -0.3 92,256 + -1.0 92,256 + -0.3 92,257 - +0.9 92,257 - +0.8 92,264 + -0.8 92,279 - +0.4 92,378 + HMPREF1058_RS02790 0.19 -1.2 92,378 + HMPREF1058_RS02790 0.19 -2.1 92,378 + HMPREF1058_RS02790 0.19 -2.4 92,379 - HMPREF1058_RS02790 0.19 -1.4 92,379 - HMPREF1058_RS02790 0.19 +0.3
Or see this region's nucleotide sequence