Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01895

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
16,209	+		HMPREF1058_RS01910	0.66	-1.0
16,210	-		HMPREF1058_RS01910	0.66	+0.1
16,315	-		HMPREF1058_RS01910	0.76	-0.3
16,378	-		HMPREF1058_RS01910	0.82	+1.3
16,586	+				+0.5
16,587	-				+0.9
16,587	-				-0.8
16,645	+		HMPREF1058_RS01905	0.24	+0.0
16,645	+		HMPREF1058_RS01905	0.24	+1.0
16,738	+		HMPREF1058_RS01905	0.54	-0.2
16,778	+		HMPREF1058_RS01905	0.66	+1.1
16,809	+		HMPREF1058_RS01905	0.76	+0.5
16,810	-		HMPREF1058_RS01905	0.77	+0.1
16,866	-				-0.1
16,899	+				-0.1
16,900	-				-0.5
16,900	-				-0.6
16,900	-				-0.9
17,086	+		HMPREF1058_RS01900	0.64	+0.2
17,109	+		HMPREF1058_RS01900	0.71	-0.5
17,110	-		HMPREF1058_RS01900	0.71	-0.9
17,156	-		HMPREF1058_RS01900	0.85	+1.8
17,194	-				-0.2
17,296	+		HMPREF1058_RS01895	0.34	-1.4
17,328	+		HMPREF1058_RS01895	0.45	-0.9
17,329	-		HMPREF1058_RS01895	0.45	-1.7
17,357	-		HMPREF1058_RS01895	0.54	-0.2
17,453	+		HMPREF1058_RS01895	0.86	-2.1
17,454	-		HMPREF1058_RS01895	0.87	+0.4
17,456	-		HMPREF1058_RS01895	0.87	-0.2
17,567	-		HMPREF1058_RS21375	0.11	+0.9
17,622	-		HMPREF1058_RS21375	0.18	-0.7
17,626	-		HMPREF1058_RS21375	0.19	+1.3
17,691	-		HMPREF1058_RS21375	0.28	-0.8
17,714	-		HMPREF1058_RS21375	0.31	+0.1
17,743	+		HMPREF1058_RS21375	0.35	-0.4
17,795	+		HMPREF1058_RS21375	0.43	-0.0
17,796	-		HMPREF1058_RS21375	0.43	-0.8
17,800	-		HMPREF1058_RS21375	0.43	+1.2
17,831	+		HMPREF1058_RS21375	0.48	-1.0
17,845	-		HMPREF1058_RS21375	0.50	-1.7
17,846	+		HMPREF1058_RS21375	0.50	-2.2
17,849	-		HMPREF1058_RS21375	0.50	+1.4
17,849	-		HMPREF1058_RS21375	0.50	+0.6
17,877	-		HMPREF1058_RS21375	0.54	+0.3
17,902	+		HMPREF1058_RS21375	0.58	+1.8
17,906	-		HMPREF1058_RS21375	0.58	-0.7
17,906	-		HMPREF1058_RS21375	0.58	-1.3
17,928	-		HMPREF1058_RS21375	0.61	+2.0
17,928	-		HMPREF1058_RS21375	0.61	+0.5
17,928	-		HMPREF1058_RS21375	0.61	+0.7
17,960	+		HMPREF1058_RS21375	0.66	-1.4
18,117	-		HMPREF1058_RS21375	0.88	+0.5
18,121	-		HMPREF1058_RS21375	0.88	-1.3
18,173	-				-2.0
18,220	-				-0.6
18,258	+		HMPREF1058_RS01885	0.15	+0.0
18,379	-		HMPREF1058_RS01885	0.45	-1.1
18,466	-		HMPREF1058_RS01885	0.67	+0.6
18,466	-		HMPREF1058_RS01885	0.67	-0.3
18,468	+		HMPREF1058_RS01885	0.68	+0.2
18,469	-				+0.9
18,469	-		HMPREF1058_RS01885	0.68	+1.7
18,484	+		HMPREF1058_RS01885	0.72	-0.8
18,492	-		HMPREF1058_RS01885	0.74	+0.7