Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01540 and HMPREF1058_RS01535 are separated by 679 nucleotides HMPREF1058_RS01535 and HMPREF1058_RS01530 are separated by 5 nucleotides HMPREF1058_RS01530 and HMPREF1058_RS01525 are separated by 325 nucleotides
HMPREF1058_RS01540: HMPREF1058_RS01540 - precorrin-3B C(17)-methyltransferase, at 97,716 to 99,122
_RS01540
HMPREF1058_RS01535: HMPREF1058_RS01535 - flavin reductase family protein, at 99,802 to 100,362
_RS01535
HMPREF1058_RS01530: HMPREF1058_RS01530 - NAD(P)H-dependent oxidoreductase, at 100,368 to 100,904
_RS01530
HMPREF1058_RS01525: HMPREF1058_RS01525 - helix-turn-helix transcriptional regulator, at 101,230 to 102,138
_RS01525
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 98.889 kb on + strand, within HMPREF1058_RS01540 at 98.962 kb on - strand, within HMPREF1058_RS01540 at 98.962 kb on - strand, within HMPREF1058_RS01540 at 98.963 kb on + strand, within HMPREF1058_RS01540 at 98.986 kb on + strand at 99.007 kb on + strand at 99.011 kb on - strand at 99.015 kb on - strand at 99.015 kb on - strand at 99.051 kb on + strand at 99.066 kb on + strand at 99.068 kb on + strand at 99.106 kb on - strand at 99.128 kb on - strand at 99.131 kb on - strand at 99.139 kb on - strand at 99.350 kb on + strand at 99.350 kb on + strand at 99.470 kb on + strand at 99.497 kb on + strand at 99.497 kb on + strand at 99.498 kb on - strand at 99.498 kb on - strand at 99.539 kb on + strand at 99.661 kb on + strand at 99.662 kb on - strand at 99.785 kb on + strand at 99.786 kb on - strand at 99.895 kb on - strand, within HMPREF1058_RS01535 at 99.943 kb on + strand, within HMPREF1058_RS01535 at 99.958 kb on + strand, within HMPREF1058_RS01535 at 100.299 kb on - strand, within HMPREF1058_RS01535 at 100.370 kb on - strand at 100.597 kb on + strand, within HMPREF1058_RS01530 at 100.597 kb on + strand, within HMPREF1058_RS01530 at 100.597 kb on + strand, within HMPREF1058_RS01530 at 100.604 kb on + strand, within HMPREF1058_RS01530 at 100.605 kb on - strand, within HMPREF1058_RS01530 at 100.720 kb on + strand, within HMPREF1058_RS01530 at 100.721 kb on - strand, within HMPREF1058_RS01530 at 100.721 kb on - strand, within HMPREF1058_RS01530 at 100.813 kb on + strand, within HMPREF1058_RS01530 at 100.819 kb on - strand, within HMPREF1058_RS01530 at 100.860 kb on - strand at 100.911 kb on + strand at 100.917 kb on - strand at 100.931 kb on + strand at 100.946 kb on + strand at 100.968 kb on + strand at 100.969 kb on - strand at 101.033 kb on + strand at 101.033 kb on + strand at 101.035 kb on + strand at 101.035 kb on + strand at 101.036 kb on - strand at 101.108 kb on - strand at 101.108 kb on - strand at 101.108 kb on - strand at 101.214 kb on + strand at 101.240 kb on + strand at 101.268 kb on + strand at 101.269 kb on - strand at 101.348 kb on - strand, within HMPREF1058_RS01525 at 101.348 kb on - strand, within HMPREF1058_RS01525
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 98,889 + HMPREF1058_RS01540 0.83 +0.4 98,962 - HMPREF1058_RS01540 0.89 +0.3 98,962 - HMPREF1058_RS01540 0.89 -0.7 98,963 + HMPREF1058_RS01540 0.89 -1.0 98,986 + +0.5 99,007 + +0.0 99,011 - -1.7 99,015 - -0.2 99,015 - -0.5 99,051 + -1.2 99,066 + +0.2 99,068 + -0.0 99,106 - +1.4 99,128 - -1.8 99,131 - -0.4 99,139 - -0.5 99,350 + -1.8 99,350 + +1.1 99,470 + -0.6 99,497 + +0.4 99,497 + -0.8 99,498 - +0.9 99,498 - -1.0 99,539 + +0.3 99,661 + -0.8 99,662 - -0.4 99,785 + -0.6 99,786 - +0.0 99,895 - HMPREF1058_RS01535 0.17 -0.7 99,943 + HMPREF1058_RS01535 0.25 -0.2 99,958 + HMPREF1058_RS01535 0.28 +0.3 100,299 - HMPREF1058_RS01535 0.89 -1.6 100,370 - -0.5 100,597 + HMPREF1058_RS01530 0.43 +1.2 100,597 + HMPREF1058_RS01530 0.43 -0.2 100,597 + HMPREF1058_RS01530 0.43 +1.3 100,604 + HMPREF1058_RS01530 0.44 +1.5 100,605 - HMPREF1058_RS01530 0.44 -2.3 100,720 + HMPREF1058_RS01530 0.66 -1.0 100,721 - HMPREF1058_RS01530 0.66 +0.0 100,721 - HMPREF1058_RS01530 0.66 +2.8 100,813 + HMPREF1058_RS01530 0.83 -0.5 100,819 - HMPREF1058_RS01530 0.84 -0.5 100,860 - -1.0 100,911 + +1.5 100,917 - -0.1 100,931 + -0.6 100,946 + +1.6 100,968 + +1.8 100,969 - +0.9 101,033 + +0.3 101,033 + +2.4 101,035 + -2.2 101,035 + -2.2 101,036 - -0.6 101,108 - +0.0 101,108 - -0.3 101,108 - +1.2 101,214 + +1.0 101,240 + +0.5 101,268 + -0.7 101,269 - +0.0 101,348 - HMPREF1058_RS01525 0.13 -0.1 101,348 - HMPREF1058_RS01525 0.13 +0.1
Or see this region's nucleotide sequence