Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01475

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
116,179	+		HMPREF1058_RS01480	0.77	+0.5
116,189	+		HMPREF1058_RS01480	0.77	+0.3
116,306	-		HMPREF1058_RS01480	0.82	+0.5
116,397	+		HMPREF1058_RS01480	0.85	+3.3
116,399	+		HMPREF1058_RS01480	0.85	-0.8
116,440	-		HMPREF1058_RS01480	0.87	+2.2
116,440	-		HMPREF1058_RS01480	0.87	-2.0
116,440	-		HMPREF1058_RS01480	0.87	-0.7
116,448	+		HMPREF1058_RS01480	0.87	+1.8
116,452	-		HMPREF1058_RS01480	0.88	-1.0
116,521	+				+0.8
116,521	+				+2.3
116,522	-				+0.5
116,522	-				-0.8
116,522	-				-1.4
116,522	-				+0.4
116,524	-				+0.4
116,526	-				+0.5
116,642	-				+0.2
116,642	-				+1.1
116,645	-				-2.2
116,794	+				+0.9
116,920	+				+0.1
116,925	-				-1.6
116,925	-				-0.2
117,013	+				-0.1
117,161	+				+1.1
117,164	+				+1.2
117,164	+				+3.6
117,190	-		HMPREF1058_RS01475	0.10	-0.4
117,295	+		HMPREF1058_RS01475	0.61	+0.2
117,295	+		HMPREF1058_RS01475	0.61	-2.8
117,350	-		HMPREF1058_RS01475	0.87	-0.9
117,377	+				+1.1
117,512	+		HMPREF1058_RS01470	0.20	+2.6
117,513	-		HMPREF1058_RS01470	0.20	+2.3
117,513	-		HMPREF1058_RS01470	0.20	+0.5
117,617	-		HMPREF1058_RS01470	0.39	-0.4
117,621	+		HMPREF1058_RS01470	0.39	-1.3
117,662	+		HMPREF1058_RS01470	0.47	-0.4
117,698	+		HMPREF1058_RS01470	0.53	-1.0
117,709	+		HMPREF1058_RS01470	0.55	+1.5
117,711	+		HMPREF1058_RS01470	0.55	-0.2
117,711	+		HMPREF1058_RS01470	0.55	+1.8
117,712	-		HMPREF1058_RS01470	0.56	-0.7
117,733	-		HMPREF1058_RS01470	0.59	+2.0
117,806	-		HMPREF1058_RS01470	0.72	+1.7
117,806	-		HMPREF1058_RS01470	0.72	+1.5
117,832	+		HMPREF1058_RS01470	0.77	+0.4
117,832	+		HMPREF1058_RS01470	0.77	+0.5
117,916	-				+0.5
117,927	+				+2.8
118,113	+				+0.9
118,148	+		HMPREF1058_RS01465	0.10	+0.2
118,152	-		HMPREF1058_RS01465	0.10	+1.3
118,223	+		HMPREF1058_RS01465	0.14	+1.8
118,227	+		HMPREF1058_RS01465	0.15	-0.8
118,239	-		HMPREF1058_RS01465	0.15	-1.3
118,356	-		HMPREF1058_RS01465	0.22	+0.4