Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS0119575

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
16,033	+		HMPREF1058_RS0119575	0.31	-0.3
16,064	+		HMPREF1058_RS0119575	0.43	-0.5
16,187	+		HMPREF1058_RS0119575	0.88	-2.5
16,188	-		HMPREF1058_RS0119575	0.89	+0.0
16,234	+				-0.2
16,262	+				-0.1
16,263	-				-0.5
16,412	+				-2.1
16,413	-				-0.1
16,418	-				-0.1
16,451	+				+0.9
16,452	-				+0.2
16,452	-				-0.8
16,619	+		HMPREF1058_RS12860	0.25	-1.5
16,619	+		HMPREF1058_RS12860	0.25	-0.6
16,619	+		HMPREF1058_RS12860	0.25	+0.5
16,620	-		HMPREF1058_RS12860	0.26	-1.1
16,621	+		HMPREF1058_RS12860	0.26	-0.4
16,621	+		HMPREF1058_RS12860	0.26	-0.3
16,621	+		HMPREF1058_RS12860	0.26	+0.0
16,622	-		HMPREF1058_RS12860	0.26	+2.3
16,623	+		HMPREF1058_RS12860	0.26	-1.0
16,623	+		HMPREF1058_RS12860	0.26	-0.6
16,623	+		HMPREF1058_RS12860	0.26	-0.6
16,624	-		HMPREF1058_RS12860	0.26	-1.3
16,624	-		HMPREF1058_RS12860	0.26	-0.9
16,624	-		HMPREF1058_RS12860	0.26	-0.1
16,625	+		HMPREF1058_RS12860	0.26	+0.8
16,626	-		HMPREF1058_RS12860	0.26	+0.2
16,648	+		HMPREF1058_RS12860	0.30	-1.5
16,802	-		HMPREF1058_RS12860	0.54	+1.5
16,863	-		HMPREF1058_RS12860	0.64	-0.1
16,863	-		HMPREF1058_RS12860	0.64	-0.9
16,999	+		HMPREF1058_RS12860	0.85	-0.8
17,000	-		HMPREF1058_RS12860	0.85	-1.5
17,004	+		HMPREF1058_RS12860	0.86	-1.1
17,050	+				+0.4
17,085	-				-1.7
17,089	+				+0.2
17,090	-				+0.3
17,154	-				+0.0