Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00570 and HMPREF1058_RS00565 are separated by 4 nucleotides HMPREF1058_RS00565 and HMPREF1058_RS00560 are separated by 294 nucleotides
HMPREF1058_RS00570: HMPREF1058_RS00570 - HD domain-containing protein, at 49,403 to 50,884
_RS00570
HMPREF1058_RS00565: HMPREF1058_RS00565 - hemolysin III family protein, at 50,889 to 51,524
_RS00565
HMPREF1058_RS00560: HMPREF1058_RS00560 - anaerobic ribonucleoside triphosphate reductase, at 51,819 to 54,095
_RS00560
Position (kb) 50
51
52 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 50.865 kb on + strand at 50.865 kb on + strand at 50.897 kb on - strand at 50.956 kb on + strand, within HMPREF1058_RS00565 at 50.957 kb on - strand, within HMPREF1058_RS00565 at 51.041 kb on - strand, within HMPREF1058_RS00565 at 51.060 kb on + strand, within HMPREF1058_RS00565 at 51.061 kb on - strand, within HMPREF1058_RS00565 at 51.162 kb on + strand, within HMPREF1058_RS00565 at 51.162 kb on + strand, within HMPREF1058_RS00565 at 51.221 kb on + strand, within HMPREF1058_RS00565 at 51.259 kb on + strand, within HMPREF1058_RS00565 at 51.307 kb on - strand, within HMPREF1058_RS00565 at 51.308 kb on + strand, within HMPREF1058_RS00565 at 51.308 kb on + strand at 51.309 kb on - strand, within HMPREF1058_RS00565 at 51.309 kb on - strand, within HMPREF1058_RS00565 at 51.311 kb on - strand, within HMPREF1058_RS00565 at 51.374 kb on + strand, within HMPREF1058_RS00565 at 51.405 kb on + strand, within HMPREF1058_RS00565 at 51.406 kb on - strand, within HMPREF1058_RS00565 at 51.406 kb on - strand, within HMPREF1058_RS00565 at 51.449 kb on + strand, within HMPREF1058_RS00565 at 51.754 kb on + strand at 51.754 kb on + strand at 52.043 kb on - strand at 52.065 kb on + strand, within HMPREF1058_RS00560 at 52.068 kb on - strand, within HMPREF1058_RS00560 at 52.251 kb on - strand, within HMPREF1058_RS00560 at 52.254 kb on + strand at 52.403 kb on + strand, within HMPREF1058_RS00560
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 50,865 + -0.0 50,865 + -2.5 50,897 - -2.4 50,956 + HMPREF1058_RS00565 0.11 -1.7 50,957 - HMPREF1058_RS00565 0.11 -1.9 51,041 - HMPREF1058_RS00565 0.24 -1.8 51,060 + HMPREF1058_RS00565 0.27 -2.7 51,061 - HMPREF1058_RS00565 0.27 -2.1 51,162 + HMPREF1058_RS00565 0.43 -1.5 51,162 + HMPREF1058_RS00565 0.43 -0.5 51,221 + HMPREF1058_RS00565 0.52 -1.4 51,259 + HMPREF1058_RS00565 0.58 +0.5 51,307 - HMPREF1058_RS00565 0.66 -2.8 51,308 + HMPREF1058_RS00565 0.66 -2.0 51,308 + +0.8 51,309 - HMPREF1058_RS00565 0.66 -2.4 51,309 - HMPREF1058_RS00565 0.66 -2.1 51,311 - HMPREF1058_RS00565 0.66 -1.5 51,374 + HMPREF1058_RS00565 0.76 -1.8 51,405 + HMPREF1058_RS00565 0.81 -3.5 51,406 - HMPREF1058_RS00565 0.81 -1.1 51,406 - HMPREF1058_RS00565 0.81 -2.0 51,449 + HMPREF1058_RS00565 0.88 -2.5 51,754 + +1.9 51,754 + +1.7 52,043 - +1.3 52,065 + HMPREF1058_RS00560 0.11 -1.0 52,068 - HMPREF1058_RS00560 0.11 -0.5 52,251 - HMPREF1058_RS00560 0.19 +0.2 52,254 + +1.5 52,403 + HMPREF1058_RS00560 0.26 +0.3
Or see this region's nucleotide sequence